RNA id: XM_036988886.1


Basic Information

Item Value
RNA id XM_036988886.1
length 5035
RNA type mRNA
GC content 0.49
exon number 10
gene id kif3b
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70510123 ~ 70521031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACGTATAATTGTTGTGAATGCCATTATAcctaagaagaagaagaagattggCTGTGACGTTGAACGCATCTCTCCATTCCATCCGGGATAGTTTTCTGGGATGCGGTTGACGGCTGCGGTAATGGCTGACTGGGTGGAAGTACTGGATTAAATGGTTCTGATGCTGGCGGGTCTGACATTGTGAACTCAGACTTGTACAGTAGTTGAAGGACATAGACACAAGGCCAGTTTGTCTGAGAATCCTCACGATGTCTAAGACCAGAGAGTCGGTGAAGGTGGTGGTTCGCTGTCGACCCATGAATGAGAAGGAGCGGGCAGCTAACTTTGAGAGGGTGGTGCAGGTGGATGTGAAGCTGGGCCAGGTGGCCGTGCGAAACCCCCGGGGGGCTGCAGCCCACGAACACCCCAAGGTCTTTACATTTGACTCTGTGTATGACTGGAACTCCAAACAGGTGGATCTCTATGATGAAACCTTCAGGCCCCTGGTAGACTCCGTTTTGCTTGGTTTCAATGGGACCATATTTGCATACGGCCAGACGGGTACAGGAAAGACCTACACTATGGAGGGGGTGCGCAATGACCCAGAGAGAAGGGGTGTAATCCCCAATTCCTTTGAGCACGTCTTCACACACATCTCCCGCTCCCAGAACCAGCAGTACCTGGTGAGGGCCTCGTACCTGGAGATCTACCAGGAGGAGATCAGGGACCTGCTGTCCAAGGACCAGTCCCGCCGGCTGGAGCTGAAAGAGAGGCCAGACACGGGTGTATACGTCAAGGACCTGTCCTCCTTCGTCACTAAGAGTGTACGAGAAATAGAGCACGTGATGAACGTGGGGAACCAGAACCGCTCGGTGGGCTCCACCAATATGAACGAGCACAGCTCCCGATCACATGCCATATTTCTTATTACCGTCGAGTGCAGCGAGCTGGGCGTCGACGGAGAGAACCACATTCGAGTGGGCAAACTGAACCTGGTGGACCTGGCTGGCAGCGAGAGGCAGACCAAGACAGGAGCCCAAGGAGAGCGCCTGAAGGAAGCCACCAAGATCAACCTGTCGCTGTCAGCCTTGGGGAATGTCATCTCTGCCCTGGTGGATGGCAGGAGCACCCACATCCCCTACCGCGACTCCAAGCTCACCCGCCTGCTACAGGACTCCCTGGGGGGAAATGCCCGCACAGTCATGGTGGCTAACATCGGACCAGCATCTTACAACGTGGAGGAGACACTGACCACGTTACGCTACTCAAACCGGGCCAAGAACATCAAGAACAAGCCCCGCGTCAACGAGGACCCTAAAGATGCTCTGCTCAGGGAGTTCCAGGAAGAGATTGCTCGACTCAAAGAACAGTTAGAGAAACGCtcagggaagaagaagaagaagaggaggaggaagggggttgGAGAAGCTGGGGATGAACTCGAAGAGGACACTGAGGATGGAGAGAcgacagaggaggaggatgatggtgTAGAACCAGCTGATAAAGTGGGTGCAGATTATTGGCGTGTACAGCAGGAgaagttggagagggagaggaaggccaTCATGGAGGATCACAGCCTGGTGGCGGAGGAGAAACAGAGGCTgctaaaggagaaggagaggaagatggaCGCCCTCAAAAAGGAGCAGGAGGCAGGCGAGATGCTGACTGCCAAAGTCAAGGCGATGGAGAGTAAGCTTCTGATGGGCGGGAAGAACATAGTGGACCACACCAATGAGCAACAAAGGATCCTGGAACAGAAGAGACAGGAAATCGCTGAGCAGaaacgcagagagagggagatgaaacaGCAGGTGGAGAATCGTGACGAGGAGACCCTGGAGTTGAAGGAGACGTACAGCTCTCTACAACAGGAAGTAGACATCAAGACCAAGAAGCTGAAAAAGCTGTTTGCGAAGCTGCAGGCAGTGAAAACAGAGATCCATGACGTCCAGGAGCTGCACAGTAAGGAGAGACAGGAGCTGGAGCAGACCCAGAACGAGTTGACCAGGGACCTCAAACTCAAGCATCTCATCATTGAGAACTTCATTCCCACGGAGGAGAAGAATAAGATTGTGAACAGGGCGTTCCTCGATGAGGAGGACGACCACTGGAAGATGCGTCCCATCACACGCATAGAGGAtgacCAGCGGATGATGACCAGGCCAGTGTCAGCAGTGGGCTACAGAAGACCCCTGAGTCAGCACGCCCGTATCTCCATGGTGATGAAGGCTGACGTCAGATACAAGgCTGAGAATATCCTGATGCTGGAGATGGACCTTCCCGCTCGGACTACTAAGGAGTACGAGGAGCCGGTCATAGCGCCCATGGTAGCAGCGGCGTTGGAGGATGCTCTGCGTGAAGAAGATGAGATTCAGGTGGACGCCTCCGGGTTCCACAGCAGCCTTGGACCCACCCAGACCACCAGCACCAGAAGGAAACCAACGTCTGGCCGACCTAAAACGGGTAAGAAGACTGTCACCCCCACCTCTCCATACAGCCCCTCCAGCCCAGGACATCCTTTATACCCACAATCCCGTGGGCTGGTGCCCAAGTGATCACCCCACACCTTtctgttttgggacccaaagactgctttttgttttgttttgctgctGAGTCTTGCAGACTGATTTGCAGAGAAAGTAAAGGACACTCAGATTCAAGCTCATTTTATTTTACCTGAGAACGTAGctgtttatgtttgtgttttttttttaaagagatttGTTACAATCTTACCATCCCAAATGGTTTCTGGACCAATACTTTTCTGAGCTGTACGTTTCCTCCTGGGCCCCTCCCAGGTCTGCAGTATGATGGGATGTGGACATGGGGGGCTGACATCTGATGAGGCACATGACAGCTGTTACATGTCATTGacatgctgtgtgtttgtgtgctgcaTGTCTGTTCAGAAGTGGTTGTGCTTCCTACTTTAGGTTTACAATGGAATGCTGTTATCCAGGAGGTCTGTCTGAGCTTCGTCTGTTGCCCTAGATaagtgtctgtactgtctgtactgcaTGGTGAAGTGTACAGGCCGGAGGGTGAAGCACACTACAACACATCTCCGTCACGCGGTGGGGACCGGTTGCTGCTGGAATCACTAGATGCTGTTCTTTCTGGCGCACATGATGGATGGCGCGACGACGGGGGGAGGGCGGCGCGACGACGGGGGGGATAGTGGGGAACTAGAGGTCAACACAAACCAAATCTATCAGGGTTCCAAGGTGCCTTTATATTCTCCTACAGGGACAGGctaaaggagaggatggaggggttgTATCGTTTCCCCAGCCTCGTCTTTATGTTCCTTGGAATCAACCGATTTCTTGTACTTGAGAGAGAttggaggggttgaatggagttGAAGGTTGGGACTAATAACTAATGTAAAACTTGTCCGTAAGACATTTTATAGGTTAACAAGAGCAGGCTGAAATACTGTACAACAAAAAACAGCTCTTCTACCTATTATACTACTATATCAGTCTCCATCAAATAGACTTGGTGTGGAAAATGAAGGTAGCTTTCCGTGTATGTTTTGGATAAATATGCAGTCTTATTCCACACGGTTGAAACGCACGGTGTGACTACTGCACGGTGTGACTACTGTCCCCACCTCCTGTCACTGTGAGGGCTGAGCCGCACCTCCTATCACTGTGAGGGCTGTGCCGCACCTCCTGTCACTGTGAGGGCTGTGCCGCACCTCCTGTCACTGTGAGGGCTGTGCCGCACCTCCTGTCACTGTGAGGGCTGTGCCGCACCTCCTGTCACTGTGAGGGCTGTGCCGCACCTCCTGGCACTGTGAGGGCTGTGCTGCACCTCCTGTCACTGTGAGGGCTGTGCTGCCgcttgctgctgctactactgggTTCTACTACCCCGTGACAtagtatatacaaatatatatatatatagagagcaACATGTCCATAGATAATCCTGCGGCACCTTTTCAGTTGTAGAAATTATACAAGTAAATAGGTCTCAATATTTGGAGAAGTTAACTTATTACCACTTTTCATTTTTATAGACACGTGTAGATTAAAGTTTTATTTTTGGATTTGTATAATTTCAATTTTATGTACACATTGTTTCATTGTTTTATACTTTTTGTTTTAATCTGACACGTTTAATAAATGGCTCTAGTTCAAATCTTTAGGTTAACTTTAAAATGTAAATTAAGGTTGGCTCAACTGCAATGTTTTATATGCTCTCTGTTAATGTGATGTTCACTCAGATTGTGTGTGTGAAAGAATATGTTGGGACATGTGTACACAGAGTATAGCAAATATTAGGAAGACTTCTCGGGTTGCAGCCATCCCCccctttccctcagaacagcctcaattcgtcggggcatgaactctgaggtgttgaaagcgttccacagggatgctggcccatgttgactccaatgcttcccacagttgtgtcaagttgcctggatgtcctttgggtggtggaccattcttgatacacatgagaaacttgtgaaacccagcagcgttgcagttcttgatacaaagCGGTGTGCCTGACACATACCatataccctgttcaaaggcacttgtctttcccattcacacaccatccatgtctcctccccttcatctacactgattgaagtggatttaacaacatAGCGTTCAGctggtcagtctcatggaaagacgtgttcctaatggttttgtacactgtgtacatTTGCCATGAGTCTTTATACAATGGTTAGCCCCTGATTTAAATTACTTCTCTGATCTTATGAAAGCTAAACAATTACACTACATATTGCATGATTTTAGAAAATTGTCACCAAGCCCTAGAATTTGGTAAATGTGAATGTTCAATTTGCTTGATAATCCCTAAATTTTTACCGCACCACACCAAGACTCCATGTATCTGTGTAGAAGACGTTTGACCGAGATCAATCTCTGATATTGTTTTAGCCAAGTTAAGAGTGTGCTGGTGCTGTCTGGGAAATGCAGAAGTCCTCTTTTTCCTTGTACATTTCTTTTTATTAAAGACTTAATTACAAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU951414 lncRNA upstream 627 70509080 ~ 70509496 (+) True G836465
TU951415 lncRNA upstream 2064 70461311 ~ 70508059 (+) True pofut1
TU951428 lncRNA upstream 18587 70489124 ~ 70491536 (+) True G836474
TU951400 lncRNA upstream 84319 70422613 ~ 70425804 (+) True G836452
TU951399 lncRNA upstream 88809 70420893 ~ 70421314 (+) True G836451
TU951458 lncRNA downstream 120 70521151 ~ 70524129 (+) True G836487
TU951479 lncRNA downstream 7044 70528075 ~ 70529519 (+) True G836507
TU951539 lncRNA downstream 86528 70607559 ~ 70607877 (+) True G836547
TU951542 lncRNA downstream 88771 70609802 ~ 70610039 (+) True G836550
TU951890 lncRNA downstream 111846 70632877 ~ 70633157 (+) True G836826
XM_021616935.2 mRNA upstream 2013 70501436 ~ 70508110 (+) False pofut1
XM_036988876.1 mRNA upstream 93155 70391119 ~ 70416968 (+) False LOC110531266
XR_005053350.1 mRNA upstream 93155 70391119 ~ 70416968 (+) False LOC110531266
XR_005053351.1 mRNA upstream 93155 70391119 ~ 70416968 (+) True LOC110531266
XM_036988875.1 mRNA upstream 134040 70371145 ~ 70376083 (+) True LOC110532792
XM_036988894.1 mRNA downstream 206864 70727895 ~ 70749329 (+) False LOC110532787
XM_036988895.1 mRNA downstream 206864 70727895 ~ 70749329 (+) False LOC110532787
XM_036988896.1 mRNA downstream 229807 70750838 ~ 70754151 (+) True LOC118966110
XM_021616931.2 mRNA downstream 233264 70754295 ~ 70759693 (+) False LOC110532786
XM_021616930.2 mRNA downstream 238956 70759987 ~ 70775436 (+) False LOC110532785
TU951291 other upstream 300488 70208678 ~ 70209635 (+) True G836374
TU951181 other upstream 476896 70032992 ~ 70033227 (+) True G836274
TU950024 other upstream 1142335 69287276 ~ 69367788 (+) True G835268
TU950033 other upstream 1243649 69261171 ~ 69266474 (+) True LOC110532770
TU950020 other upstream 1265645 69242214 ~ 69244478 (+) True G835266
TU951966 other downstream 233320 70754351 ~ 70759695 (+) False LOC110532786
TU951967 other downstream 233320 70754351 ~ 70759643 (+) True LOC110532786
TU952565 other downstream 711755 71232786 ~ 71233424 (+) True G837369
TU952646 other downstream 860128 71381159 ~ 71381658 (+) False znf335
TU952642 other downstream 862868 71383899 ~ 71384463 (+) True znf335

Expression Profile