RNA id: TU951399


Basic Information

Item Value
RNA id TU951399
length 422
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G836451
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70420893 ~ 70421314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATGAAACCGTGGGTTTGTATTTTAATAACATAACACATGACAGTTCAAAGATACAATGTACTGTACAATCAGTAAATAGGTTTGTTGTTATGTCATCTCTTTGGATCAACCAATATACAACATCTGTCACTTTGCAGCAACTGATTGCATGTGAGatatgaaacaaaaaaaaaaaaagctgttttTCTCTGAAGAATATTTTTTATACAATTCTCCCTGTAGTTGATCAACTCCATGCTATATAAAATAGTGTAAGGATGACCCTTTCCCCCCCAGAGGTGGCTGTAAAAAGTACTAAACATAAAGGAGATGTCACTAAACATCATACACAAAGAGCTTGGAGGACATACATtaagctaaaaaaaaaatgtaaaactacaTGTGAATCTTGTCTTCACCAGACAGTACCCAGtttctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU951375 lncRNA upstream 47049 70373321 ~ 70373844 (+) True G836449
TU951371 lncRNA upstream 51348 70368700 ~ 70369545 (+) True G836447
TU951332 lncRNA upstream 99353 70285939 ~ 70321540 (+) True G836412
TU951323 lncRNA upstream 145957 70274673 ~ 70274936 (+) True G836404
TU951302 lncRNA upstream 155682 70240306 ~ 70265211 (+) True G836385
TU951400 lncRNA downstream 1299 70422613 ~ 70425804 (+) True G836452
TU951415 lncRNA downstream 39997 70461311 ~ 70508059 (+) True pofut1
TU951428 lncRNA downstream 67810 70489124 ~ 70491536 (+) True G836474
TU951414 lncRNA downstream 87766 70509080 ~ 70509496 (+) True G836465
TU951451 lncRNA downstream 97875 70519189 ~ 70520992 (+) False kif3b
XM_036988876.1 mRNA upstream 3925 70391119 ~ 70416968 (+) False LOC110531266
XR_005053350.1 mRNA upstream 3925 70391119 ~ 70416968 (+) False LOC110531266
XR_005053351.1 mRNA upstream 3925 70391119 ~ 70416968 (+) True LOC110531266
NM_001165184.1 mRNA upstream 42519 69312325 ~ 70378374 (+) True tnr5
XM_021616937.2 mRNA upstream 44810 70371145 ~ 70376083 (+) False LOC110532792
XM_021616935.2 mRNA downstream 80122 70501436 ~ 70508110 (+) False pofut1
XM_036988887.1 mRNA downstream 88809 70510123 ~ 70516707 (+) False kif3b
XM_036988885.1 mRNA downstream 88809 70510123 ~ 70521031 (+) False kif3b
XM_036988886.1 mRNA downstream 88809 70510123 ~ 70521031 (+) False kif3b
XM_036988894.1 mRNA downstream 306581 70727895 ~ 70749329 (+) False LOC110532787
TU951291 other upstream 211258 70208678 ~ 70209635 (+) True G836374
TU951181 other upstream 387666 70032992 ~ 70033227 (+) True G836274
TU950024 other upstream 1053105 69287276 ~ 69367788 (+) True G835268
TU950033 other upstream 1154419 69261171 ~ 69266474 (+) True LOC110532770
TU950020 other upstream 1176415 69242214 ~ 69244478 (+) True G835266
TU951966 other downstream 333037 70754351 ~ 70759695 (+) False LOC110532786
TU951967 other downstream 333037 70754351 ~ 70759643 (+) True LOC110532786
TU952565 other downstream 811472 71232786 ~ 71233424 (+) True G837369
TU952646 other downstream 959845 71381159 ~ 71381658 (+) False znf335
TU952642 other downstream 962585 71383899 ~ 71384463 (+) True znf335

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU134549 True 1393 lncRNA 0.33 1 CI01000021 4894303 ~ 4895695 (+)
striped catfish (Pangasianodon hypophthalmus) TU300820 False 1085 lncRNA 0.35 1 NC_047610.1 12897484 ~ 12898568 (-)
tiger barb (Puntius tetrazona) TU230505 True 1323 lncRNA 0.34 1 NC_056721.1 7920203 ~ 7921525 (+)