RNA id: TU230505


Basic Information

Item Value
RNA id TU230505
length 1323
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G155651
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7920203 ~ 7921525 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgaAAATATTATCGTATTTTGGCTTAAAGCTATCAAAACCtataatttatttctaagaAATAGGAAGATGgtaaaaagaagaataaaaggCTTTTGGCAATTTCTGAGTTTGTCCTCCCCAGGTTTTCTGTGAGCTGATCTGAATTCTAGcacttttaaacctttaaaaagagtatttttcagccttgtatgtttgtatgtttttaattttgtatttgattttgtATGTGCCATTAGTTTGATGTGTAGAGTTTATTCATCTTtatgtaattgttgtttttctcctttcccAAAAGAGTAACAGTATTTTAGATAGGTTTTCACTAATATTAACAGCTTTGGCCCTTCCCCACGCTGTCTTGTCATACATTTGAGGAATTCATTTCATCTTAAAATAACGCGCCCAGAATCGTTCTCTGTGTCTGAATTCTGATACTTGATAAAATCATAATCGCCAcaaacgaaagaaaaaaaaacgttacgCTATAACTGAGGTGTTTtcaatcagcatttttttaatagcaagCTGGCAGGTTCAACTGGTGTGAAATTGTTCCCAGCTCTCTGCCCCCAGAAAAGCACTTTTGGTTCAAATGAAGTTTTATATAATAACTGCCAGGATAGTTGGAGCTTAGCATCTGATTTTAGTAATCGGAGGTGTTTTTACCAGCAATATTCTGCAACACAGATTACCCCGATTGatcttttcctcttttgttgCAATGCACTTGTCCTTTACTCCCCAAATACTAACAAAATATTAAGGGAAATAATGAGGTAACCAAGCTagggtaaaaacaaacaaacaaacaaaacaatctgacttttaagaaaaggaaaaatgatTCAATAAAATGCTCTTTCGGCTTATAGCGTGAAAATGGGTACGTCCGCAGAGGACAAAATCCACTTGTAGTTTGATATATTTTAGCTTAATGTAAGTCTTGCATTCCAAGCTTTTTATGTAACTTGTTTAGCAATATAGTCGTTCTATTTTTAGTACTTGCTTATTACCACAACTTCTGGAAAAaaggtgaaaagaaaaaaatggaatattCATCCTTacactattttatataaacatggAGAAGACGATTGACAGGACGAATTgtacaaaagaaatgcataacGGAGATAAACAGTGcgcttttttttgttacacaGCTCACCTGCGGTCAGTTGCTGCATTGTAAAGTTGACAGATTTGTATATTGGTTGATCCAAAGAGATGACATTACAACAAACCTATTTACTTATTGTACAGTACATTGTACCATTTGACTTGTTATGTgttatgttaaaatgattaaaagacGAACCCAC

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247860.1 lncRNA upstream 51529 7866780 ~ 7868674 (+) True LOC122328944
XR_006247861.1 lncRNA upstream 51529 7866780 ~ 7868674 (+) False LOC122328944
TU230441 lncRNA upstream 519014 7400990 ~ 7401189 (+) True G155619
TU230289 lncRNA upstream 1081042 6836963 ~ 6839161 (+) True G155509
TU230292 lncRNA upstream 1081459 6836963 ~ 6838744 (+) False G155509
TU230496 lncRNA downstream 497 7922022 ~ 7923577 (+) True G155645
TU230509 lncRNA downstream 8208 7929733 ~ 7932056 (+) True G155655
TU230519 lncRNA downstream 17081 7938606 ~ 7939756 (+) True G155660
TU230588 lncRNA downstream 62570 7984095 ~ 7985586 (+) True G155701
TU230593 lncRNA downstream 115378 8036903 ~ 8037263 (+) True G155704
XM_043225458.1 mRNA upstream 162 7884296 ~ 7920041 (+) True plagl2
XM_043225459.1 mRNA upstream 162 7914320 ~ 7920041 (+) False plagl2
XM_043224568.1 mRNA upstream 98410 7815091 ~ 7821793 (+) True LOC122328711
XM_043224569.1 mRNA upstream 98410 7815098 ~ 7821793 (+) False LOC122328711
XM_043224443.1 mRNA upstream 146231 7766223 ~ 7773972 (+) True LOC122328639
XM_043224025.1 mRNA downstream 193416 8114941 ~ 8132951 (+) False slco4a1
XM_043224026.1 mRNA downstream 198701 8120226 ~ 8132951 (+) True slco4a1
XM_043225307.1 mRNA downstream 234668 8156193 ~ 8175519 (+) True ntsr1
XM_043225408.1 mRNA downstream 359701 8281226 ~ 8307764 (+) True LOC122329211
XM_043224225.1 mRNA downstream 400180 8321705 ~ 8333165 (+) True LOC122328506
TU230347 other upstream 615845 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 681284 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 1325468 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229052 other upstream 4223565 3694652 ~ 3696638 (+) False ube2t
TU230667 other downstream 410216 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 566561 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 1104983 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 1199359 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 1199359 9120884 ~ 9122393 (+) True G155927

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU134549 True 1393 lncRNA 0.33 1 CI01000021 4894303 ~ 4895695 (+)
rainbow trout (Oncorhynchus mykiss) TU951399 True 422 lncRNA 0.34 1 NC_048573.1 70420893 ~ 70421314 (+)
striped catfish (Pangasianodon hypophthalmus) TU300820 False 1085 lncRNA 0.35 1 NC_047610.1 12897484 ~ 12898568 (-)