RNA id: TU230519


Basic Information

Item Value
RNA id TU230519
length 993
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G155660
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7938606 ~ 7939756 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTGTAGTGGCTGACCAGATCCTGCAGAGTGTTGAAGGTGATACGTGGAGAAATATAGAAACCGCCATTATCGAGCGTGCGGATCTTATAATGCTTCACCGTGTCTCCTGTTTGGTGGTTTCACTGTCTCTGATCATGTAAGATCCTATTTTGTTTCCAGATGCCAGCAGCTGTCTCTCTGCATCCTTTCTGCTGACACCTTTAAAAAACCAACTGTAGACatatacatagaaaaaaaagtgaaaaccaTAACCGCTCAAACGTTTCTTGTGATCAGCAAGGctgtttgtttgatcaaaaatacagtaaaaatggtaatattgtcaaacattataatttaaaataaccttaaaatgctatttatttctgtgtttcagtccttacttcagtcttcagtgtcacacgatccatCAATCATTGCAATATGCCAACAATTcttaatattatcaatgttgaaaaaagctgagctctttaatatttttgtggaaactgtaaaaaaaaaattgccctttttttttttttttttaaagttcaaaagaacagcttaaTGTTTAACTatttacagtcacttttgatcaattcaacataacttaaataaaaagtatcataataatttacacaaccttattattattacacgtgtccctggaacacaaaactagttataaaagggttttttaacatctgaaagctgaataaataagctttccatgtATGTTTTGTTAGGATATTCACCTTTAAAGTTCTTGGCAAAGCATAGTACTAATCAAAATACTAGTACTAAATCTACAAACTATCTTCAGGGAACAAGAGCTCCAGGCCCAGGTTCACATATTATAAACAACCTTTACAGTGAGATCAGTGGCACCACTACAAATGTACACAAACTGTATTTACGCACTCTTCAGTTTCCAGAGTATCCTTGGCAACATAGTTACTGGGGATGAAGCCTTCCTGACCAGTGCTGATGGATGCTGCTTTCCACCATTCGC

Function

GO: NA

KEGG:

id description
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230509 lncRNA upstream 6550 7929733 ~ 7932056 (+) True G155655
TU230496 lncRNA upstream 15029 7922022 ~ 7923577 (+) True G155645
TU230505 lncRNA upstream 17081 7920203 ~ 7921525 (+) True G155651
XR_006247860.1 lncRNA upstream 69932 7866780 ~ 7868674 (+) True LOC122328944
XR_006247861.1 lncRNA upstream 69932 7866780 ~ 7868674 (+) False LOC122328944
TU230588 lncRNA downstream 44339 7984095 ~ 7985586 (+) True G155701
TU230593 lncRNA downstream 97147 8036903 ~ 8037263 (+) True G155704
XR_006247805.1 lncRNA downstream 114581 8054337 ~ 8076320 (+) True LOC122328539
TU230693 lncRNA downstream 468410 8408166 ~ 8410045 (+) True G155756
TU230773 lncRNA downstream 673658 8613414 ~ 8617005 (+) True G155813
XM_043225458.1 mRNA upstream 18565 7884296 ~ 7920041 (+) True plagl2
XM_043225459.1 mRNA upstream 18565 7914320 ~ 7920041 (+) False plagl2
XM_043224568.1 mRNA upstream 116813 7815091 ~ 7821793 (+) True LOC122328711
XM_043224569.1 mRNA upstream 116813 7815098 ~ 7821793 (+) False LOC122328711
XM_043224444.1 mRNA upstream 164634 7766227 ~ 7773972 (+) False LOC122328639
XM_043224025.1 mRNA downstream 175185 8114941 ~ 8132951 (+) False slco4a1
XM_043224026.1 mRNA downstream 180470 8120226 ~ 8132951 (+) True slco4a1
XM_043225307.1 mRNA downstream 216437 8156193 ~ 8175519 (+) True ntsr1
XM_043225408.1 mRNA downstream 341470 8281226 ~ 8307764 (+) True LOC122329211
XM_043224225.1 mRNA downstream 381949 8321705 ~ 8333165 (+) True LOC122328506
TU230347 other upstream 634248 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 699687 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 1343871 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229052 other upstream 4241968 3694652 ~ 3696638 (+) False ube2t
TU230667 other downstream 391985 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 548330 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 1086752 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 1181128 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 1181128 9120884 ~ 9122393 (+) True G155927

Expression Profile