RNA id: TU230496


Basic Information

Item Value
RNA id TU230496
length 1518
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G155645
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7922022 ~ 7923577 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGGcacctttattattttgtacattagAAACGGACATTCTTAAAAGAGGAAGGGAaagttcaaagaaaaataaaaaaaataacatgcttttGCCTAAAACAAAGACATAACTGGACGAACAGCTCCACAAATAAATCCCTAAAATGCAACAATATAAAGTACTGTATTTacaccataaacacacacacacacgcaacagGCAGAATAAAGTACATCTGtagaaaatatattctgtagatcttgcatttattcataaagtCACCTGTAAAGACAACATCAGGAAATACAGAGCGGTCCAaaagcagacatttttttttttttttttttgctatagtGTTTTAAACTACTGAATCCTGCATCTGCTTCCTTTTAGGGCTCAGGAGTAATAATTAGGATCCAAATGTTGTAGCTTGTGTTTTGAGAGAGCTAAAAATGGcaatcattttaaagttaaaatctaaaaagtacCATGAACGTAAGCAAATATGTCGCTACCTGCTGGCCGTTGCGCACATTTCTGTTGATACCCTTGAATTTTGAGGTAAATCCACCAAGATGCATCTAGTTTTGGCTACAGCAATAGTTAACAAGTGAAGTCAATACATGgctgaaaaggtttttttaagagaaaaatgGCTTCTCTAATGTGAAATATCAAATGTGTGTGATACTGAAAAACAGGACTTTCTCTTGATGgcaaagaacaaacaaacaaacaaagcgaTACTGCATCGTTATAAGAGTCTTTTAGGTCCAATGACCAGCAAGCACAAGGAAACAGAAGGAAATCTACTTTTTTAATGTCCTTGCCTCATCATGTCTTTACATCCCATAATTTCAGTCCATGCCAACATATAATGACCACAGAGTGAccacacacacacacacacacacacacacacacacacccctcaaCAAGACAGGCATTCAAGAACTCAGTTCTGAATCAAAGACATAGGAACAAGTTGAAatcaaatgttatattaaaaggACACAAAGTTAATTTGTAAAATGGTATATGCAACTAACCCTCAATGTCTTCAAAAGCATGAGACCCAGCCCAAAAAAATCCAACATCCCCAcccaaacaaagaaaaaaaaaaaaaaaaaaaaaaaaaagtcaaatcgACACACTTTGGCCCATGTTGTGTGTGcaaaaagatatacagacattaaaaatggAACTGTTCATGTTGTTTCTTTACATCTTTGCTGAGGCAGAGATAGCAGGACAGAAAGGTTTTGATAACGGTATACAAAACACATCTCTGTTCATTCCTCCAGTTCATAGGGGGGCGCTGCTGCGCCTCACGCCAGCAATTCACACCTCAGTGCTTGCttcacaaaacagaaaaaaaggaaacgaAAACAAAGAATCTTCAGTCGATTTTGACCGCAGCATAAATTTTCCTTATGAACACGTAAGCGGCGTAGAAGCCGATTGTTCCCGTTAGCAGCCAGAAAGACAAAACCATCAGGGTTGTGTATCCAAAATACAATAGAGAGGGAATGAACT

Function

GO:

id name namespace
GO:0071702 organic substance transport biological_process
GO:0071705 nitrogen compound transport biological_process
GO:0033036 macromolecule localization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230505 lncRNA upstream 497 7920203 ~ 7921525 (+) True G155651
XR_006247860.1 lncRNA upstream 53348 7866780 ~ 7868674 (+) True LOC122328944
XR_006247861.1 lncRNA upstream 53348 7866780 ~ 7868674 (+) False LOC122328944
TU230441 lncRNA upstream 520833 7400990 ~ 7401189 (+) True G155619
TU230289 lncRNA upstream 1082861 6836963 ~ 6839161 (+) True G155509
TU230509 lncRNA downstream 6156 7929733 ~ 7932056 (+) True G155655
TU230519 lncRNA downstream 15029 7938606 ~ 7939756 (+) True G155660
TU230588 lncRNA downstream 60518 7984095 ~ 7985586 (+) True G155701
TU230593 lncRNA downstream 113326 8036903 ~ 8037263 (+) True G155704
XR_006247805.1 lncRNA downstream 130760 8054337 ~ 8076320 (+) True LOC122328539
XM_043225458.1 mRNA upstream 1981 7884296 ~ 7920041 (+) True plagl2
XM_043225459.1 mRNA upstream 1981 7914320 ~ 7920041 (+) False plagl2
XM_043224568.1 mRNA upstream 100229 7815091 ~ 7821793 (+) True LOC122328711
XM_043224569.1 mRNA upstream 100229 7815098 ~ 7821793 (+) False LOC122328711
XM_043224444.1 mRNA upstream 148050 7766227 ~ 7773972 (+) False LOC122328639
XM_043224025.1 mRNA downstream 191364 8114941 ~ 8132951 (+) False slco4a1
XM_043224026.1 mRNA downstream 196649 8120226 ~ 8132951 (+) True slco4a1
XM_043225307.1 mRNA downstream 232616 8156193 ~ 8175519 (+) True ntsr1
XM_043225408.1 mRNA downstream 357649 8281226 ~ 8307764 (+) True LOC122329211
XM_043224225.1 mRNA downstream 398128 8321705 ~ 8333165 (+) True LOC122328506
TU230347 other upstream 617664 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 683103 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 1327287 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229052 other upstream 4225384 3694652 ~ 3696638 (+) False ube2t
TU230667 other downstream 408164 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 564509 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 1102931 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 1197307 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 1197307 9120884 ~ 9122393 (+) True G155927

Expression Profile