RNA id: XM_043224569.1


Basic Information

Item Value
RNA id XM_043224569.1
length 2953
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC122328711
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7815091 ~ 7821793 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCAGTGCGTCAGCTGGTTTATGTTTACATCGCGTCAATTTTTTCGCAGTCAAGTTAGACCTTATTGCGCCCGGAGCCAAAAACACGACGTGCGCGTTGATGTGATCGATGGACATTGCTGGTTTGGACGAGACAACCGCTGAGACAGCGATAGGCGCGCATCGGGACCGGTCTTAGAAGCTCTTCTGTTTTGGTCATGGGTGGAGCCGTGAGCGCAGGCGAGGACAACGACGAGCTGATTGACAACCTGAAGGAGGCCCATTACATCCGCTCGGATCTGGTGGAGAGGGCCTTCCGAGCCATTGACAGAGCAGACTATTACCTGGAGGAGTACCGTGACAGTGCGTATAAAGACCTGGCCTGGAGACATGGAAACCTCCATCTGTCTGCTCCGTGCATCTACTCTGAGGTGATGGAGGCCCTGGATCTGCAGCCTGGCCTGTCTTTTCTCAATCTGGGCAGCGGGACGGGTTATCTCAGCACCATGGTGGGCCTTATACTGGGTCCGTTTGGTGTGAATCACGGCGTGGAGCTGCACGCAGATGTGGTTGATTATGCATATCAGAAACTTGACCACTTTATCAAAACCAGCGACAGCTTTGACAAGTTTGAGTTCTGTGAGCCAACCTTTGTGGTGGGAAACTGTCTGGAGATCCCCCCGGAGAGCCGGCAGTATGACAGGGTGTACTGTGGAGCAGGAGTTCAGAAAGAGTACGAGAACTACATGAAGAACCTGCTAAAGGTTGGCGGGATCTTAGTTCTCCCCCTGGAGGAGAAGTTAACCAAGATCACCCGCACAGGTCAGAGCTCCTGGGAGACCAAGAAAATCATCGCTGTGACTTTTGCCCCCCTCGTCCAGCCCAAACAGAACGTCAATGGCAGACCTAGGAGCGTTCCTTTACCCATTTTTGAGGTGCGGACACTACAGGACCTGTGTCGGATTGCTATTCGCCACACTCTGCGGCAGCCCATAGCTATGGGAGAAGGACGCACAAAGAGACGCGTGTCTTTCCCAGGGGCCCGGGCCATGCACCGCTACGGGCCCCGCTTCGAACGCCGCCGCTTCTGCCGGCGTTTCTACCGCCAGTGCGTCAACTCCGTGGTTCTCCACGACTCCATGATTCCCACAGCCATGGACGACTGCAACTACCCCGGAGGagtggaagaggaagaagaggaagtggaggaggaagaggaaagagGTTGTCGGCGAGTGAGAGAAGACCTGCCCGAGGAGGACGAGGACGAATGCGGCGGCACCGAagaggacaaaaacaaaagcggCTGCGCTCGTGCAGAGCCTCCCGTTAATATTCTGAGGGAGAAGATTCTAAGACTACCGTTACCTGAACCCCTGAAGATGTATCTGCTGTATTACAGGGAGAAATGAGACGTGGAGACAGATAATACGTGCAGCGTAGCGTTAAGATGATTAGACATGAAGAAAAGCctttctcttcttcctcctcctcctcctcaacTGGATTAGCATGACAATTAAGTCCTCAATTAATGACATCATGATATCCATATCCCTTTGAGAAGCAAAGCTCCTTGATTCGGGATGTACAGAGACGGGACTGAAGGACTGAGCTCCTTTTCCCGAATAATCAACGTCGCCTGAGCTCTTgcagctctttttttaattcattttcccTTCGATTGAGATGATCAAAGTGTACGATACGATACATTGTCCCTGTGGGAAATGCTTGTCGCcgtgagcttttttttttttttttagagtagCGTGACTTTAGGAAGTGGCGTAGTTTGACATGGCGgatgaatttttgttttatagcttTATGGTGCGGTTACGTTTACCCTAGCTTGGTGGAATCTATTCATCGGCGCGACTGGGAGTTTGACGCAAGGAGGTAGAAGTTCCTCATGCAGATGTCTCTCGTGCCCGCGGGGTTCGAGAGAATTCCCCACAACTGCTCGGTTTGATGTGAGTGGTGCTTCACGCGATTGGCGTTTCGTGGGAGTACGGAAAAGTACCTCTTGCCCGTTGGTAACGCAAAATTGCCATGTTGACTTGTTGAAAAAAACGCTTGgtttgaaaatgacttttgatGTTGGACCTTCTTTGCCTGCGAAATTTCGCTAATATGACTGCACCCCAAAGTCGGCCCTCCACTGTTGGAACTCTTTTCCTTGCCTCTACTGTGTTCTCCAAAATACTAAATAACGTCTGCATGTGTACTGCCGTAATGCACCCGCATTTTGTCAATATTGGAGTTTGTGGTGGTATGATGCATTTTATCATGTTAATTCGATTACCGTTGCCGGTTGACGCCGCATTGTAATTTTATTCCACACTCGTATGAAGGCAGGCATCGTTTCTGCACCCCACACTACAGAATCATTGTCATATTGCAAGgtttacaaattatattgtaAAGGTTGTGTCAAaacgaagagaaaaaaaaaataattaaaaagtctaTTTATTGGTAATCACCAAAAATTCAAGGTATATAAAGCACTTTGGTGTTTTTCACAAATTCAAATAGTTGCGTTCAAAATCTTTGGCCCTACTCAGGAATACTTTAGAAAaacattagttattttttttaaactccttCATACAATAAAAAGACCAAAATGTTAGTACCTTTCTAtttttttgaccaaaaatgttgaaaataatctGCTTTTTATATAATCGCACTACATCTGTACAGGAAGACTATTCTAAGCATACAATGATTGGATCTGGCAATTCTATGATCCCGGGCTCGATTTCTACACATTTCATCAGTCCAGGAGTCCATTTTCTTTAGTTCTCCTCGAGACCAATGCTTAGATAGCCCAAAAACAATCCAGGATATTATCATGAGAAAAGTCTTTACTCTTCTGACGTACAAGCATATCTACCAAGTTTTGCTTGAAACAATTGTGTGCTTGTCACAGAACCTTCAATAAAGTTTGAGTTTGCACACTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230441 lncRNA upstream 413909 7400990 ~ 7401189 (+) True G155619
TU230289 lncRNA upstream 975937 6836963 ~ 6839161 (+) True G155509
TU230292 lncRNA upstream 976354 6836963 ~ 6838744 (+) False G155509
TU230227 lncRNA upstream 993048 6797111 ~ 6822050 (+) True G155457
XR_006247834.1 lncRNA upstream 1086888 6725037 ~ 6728210 (+) True LOC122328804
XR_006247860.1 lncRNA downstream 44987 7866780 ~ 7868674 (+) True LOC122328944
XR_006247861.1 lncRNA downstream 44987 7866780 ~ 7868674 (+) False LOC122328944
TU230505 lncRNA downstream 98410 7920203 ~ 7921525 (+) True G155651
TU230496 lncRNA downstream 100229 7922022 ~ 7923577 (+) True G155645
TU230509 lncRNA downstream 107940 7929733 ~ 7932056 (+) True G155655
XM_043224443.1 mRNA upstream 41126 7766223 ~ 7773972 (+) True LOC122328639
XM_043224444.1 mRNA upstream 41126 7766227 ~ 7773972 (+) False LOC122328639
XM_043225224.1 mRNA upstream 50046 7731770 ~ 7765052 (+) False myt1b
XM_043225458.1 mRNA downstream 62503 7884296 ~ 7920041 (+) True plagl2
XM_043225459.1 mRNA downstream 92527 7914320 ~ 7920041 (+) False plagl2
XM_043224025.1 mRNA downstream 293148 8114941 ~ 8132951 (+) False slco4a1
XM_043224026.1 mRNA downstream 298433 8120226 ~ 8132951 (+) True slco4a1
XM_043225307.1 mRNA downstream 334400 8156193 ~ 8175519 (+) True ntsr1
TU230347 other upstream 510740 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 576179 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 1220363 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229052 other upstream 4118460 3694652 ~ 3696638 (+) False ube2t
TU230667 other downstream 509948 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 666293 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 1204715 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 1299091 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 1299091 9120884 ~ 9122393 (+) True G155927

Expression Profile