RNA id: XM_043225459.1


Basic Information

Item Value
RNA id XM_043225459.1
length 4423
RNA type mRNA
GC content 0.43
exon number 3
gene id plagl2
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7884296 ~ 7920041 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAAGCTCCGGCTTCACGCGTTCTGTCACACAGGAGAGAAACCCTTCCACTGTTCCCAGCCCCACTGCCCTAAGGCTTTCAGCTCCAAATATAAGCTCTTTAGGATAGTGCAGAGCATGAGGACGTGAGGACTGGAATTGAGAACCACCGGTATAAAGGAGTGTAGTCCAGTCCTGTTCCTGAAGGCccactgtcctgcaaagtttagctgAAGCCCTAGTTAAACACATCTGAATGAGCTAATCAAAGTCTTGAGGAATAACAGATAAAGGCACATTGAAACTTCCAGGCATATGGCCACACACTCCCCACAGAAGACTCATCAGTGCTCATTCTGTGAAAAGATGTTTCACCGCAAAGATCACCTGAAAAACCATCTGCAGACTCACGACCCCAACAAAGAGGCCTTTAAGTGCGAGGAGTGTGGCAAACACTATAACACGAAGCTGGGTTACAAGCGCCACATGGCCATGCACTCAGCCACAGCCGGTGATCTTACCTGTAAGGTGTGCTTGCAAAGCTACGAGAGCACGCCTGCACTCTTGGAGCACCTCAAGAGCCACTCAGGCAAGTCTTCAGGTGGTGCCAAGGAGAAGAAGCATCCCTGTGACCACTGCGATCGTCGCTTTTACACACGAAAGGATGTTCGCCGACACATGGTGGTTCACACGGGGCGCAAAGACTTCCTGTGCCAGTACTGTGCCCAGCGTTTTGGGCGGAAGGACCATCTGACACGGCATGTCAAGAAGAGCCACTCGCAGGAGTTGCTGAAGATCAAGACAGAGTCTCCTGATATGCTGGGTTTACTTGGGTCTGGTTCTCCACCTTGTGCTGTGAAAGAAGAAATAAGTCCTATGATGTGTAGCATGGGACCTACCAAGGACTCGATGATGGCAAAGCCTTTCCACGGTGCCACCCCTTTTCCCATGGGCATGTACAACCCTCATCACCTCCAGGCCATGTCCAGTCCTGGTGTGGGCCACCATCACTCACTGGTTCCAGGGTCTTTATCCACTGCCATGGGGATGGGTTGCCATATGGAGGCCCCGTCATCACTGCACCACCATCAcccacatcatcatcatcaccaccacccTCACCATCATCACCACTCCCCACCTCCACACCAGCAGCAGCCTCCCCTGCAAAGCCAGCAACAGCAGCACCCTCAGCCACCGCCCAAGTACCAGCTCGGATCTACCTCATACCTGCTGGAGAAGCCCCTGAAGGTGGAGATGGAGAGTTTCCTGATGGATCTACAGAGTGGACTCCCAGTTCCTCCACCGCCCTCAGCCGATCCCCACTCAGCAGCTTCGCCCAATAAGGAGGGTATGGAACCTCCGGCAGGACTGTCGGATGACCTTTGCGGGAACCCCCTCATGTCCAAGAGCCCCGCCGTCATTGCTGAGTCTTTGTGTGCTGCTAACATGGACTTTTCTCATCTGCTGGGCTTTCTTCCACTCAATCTGCCACCCTACAGTGCCCCCATGAGTTCAGGAGGACTGGTCATGGGTTACTCCACATCCTCCACcgtttcttcctcttcttcctcgtCGTCGTCAGCATCTTCACATGCTGCTGAACCACATGCTGCCACAGCCCCAGCTGCAGTGCCTCTTACCTCTTTGCAACCTCAACCTCAGGAGCAACCAGGCTCCGGTGGGGGTCTCGGTCTCGGGTCTCTGCACCCACTCCCACCAGTGTTCAGCTCTAGCCTCAGTACGACCACTCTGCCTCGCTTTCACCAGGCCTTTCAATGAGGTCCCCACCCCGACCTGACCTGCTACAGAGGCTCAGGGCAGAGGAGCGTCAGTGCTTCCCCTAGGGGTGGGGAGGTAGAACACTTGAACACATAGAAGCCTTAACAAAAGCGCACAACAGCTTTTTAATGAGCCTGGAGGAAAACAAGCATATGAAATATCATGGAGCTTTTATTTAGGCTGTCTGAATATTagctatgattttttttaaataccctTTTGAACCTCTCCCACCATCCCCTCTCCTACAATTTTGTAGTTAGACAGCAGCATCAGTAGGCCGTAAGGCATGGTACTGCATACTTTAATAATATGagtagaaaaaggaaaagattaaTGTAGAAAAGATAATCTGTCTTTGAGACTCTGAAAGATTAGTTTGAAGTGATATATGAATTTCGTTTTCTTTTCCAAATGTGAGGCCTGACTTTATTATATTGTCTCTATTCTATTAAGCTTATAAGTCAGGTAATAGCTGGTTGCCCTTAAACTAAAACCGTCTTCATGGCCAGGAGTGAAAGAATTAGTGAAGGAACGAAGGAGTGAAATAGGTTATTTCAAATTTAGATTTAATCAAGTTATTATTACAGATTCACATATGAATTTcaaaaagcagtttaaaaacaaatactgtgTACCTGATTTAGATGAAATTGTCATCTAAAATGTGTTCCTCCAGCTTTTTTATTGATGATACAAATTTAGACTTGTTGGAATGATCAgtaattagtttttctttaagaGAAGCAGAGGAACTGAAACTAGAAAGGCAaagagggtaaaaaaaaaactgcacaatttGTTCATTTGGTACAATGTGATCACTGACagaacaaaagcaaaagaaattcTACGTTATCTTACAGGTTTACAATTTTTCTCAAATGAAGCACTTTGTTTACAGCAGAAGGCACTTGACCCCTTTGGGTTGCCAAGGTGACCCACTGAAATCCCCTCCCTTTCCCCACTCTACCTTCACGCTTCCTGAAAAGAGACTGCCAttagactcacacacacacacacacacacacacacacacacacacacacaaagttcaACAACCCAAGTACCTTTGAATTCTCCACAGCAATCCGGTTTTCCTCCTTCCAGCACTAATTTTACGTCTCCGTGGCAACAATATCCCACCAGAtcatgatataaatatatgtattttaagaataaaaaaaaaaaaaaaaaaaaagtattttaggcAGGTTTATATTTTAGAGAGATACATTGTAATGATAACCCTGGTATATGTGAatggaaaaaagacaaaacaaaaacaagaatattttttttgcagtgtacgAAGTACcacatcaaaatatatatatatatataaatatattataatttcttctttttcagtacattttgtaatttagatagctgtattaaaaaattgctgatggattttaaaaaaatgtctagcAGGTTTACAGAATTATGTATCTTGCATCTTATTGAACAAAATGGATGAAGTATTAGCTTTTCCCTATAGCTTTCCCGTTCCTTGTTTTTTCCATGTGAGTCAAAAGAGATGAATAAGATGGGATTTTTCCTGCATATACTAGACTAATAGTGGCATAATCCAGTAGAATGGACTAGTCTTTAATCTTTAGAGCATGAGCTAGATGCCCATAATGTGATCCAGGTTTCagtttgcgtttttttttttttgttctcagtATTCGATCAGACCTGACTCATGCTGTctatttgtgtgtttggatgtacAGTTTTTAAACTCCACGATCATACGCCGTCGCACTGAAACGTCTGAAACCGCAATTCCAGTTGCTGTAGGTTCAGTTTAATATTACGCATTTCGAGGGGTTTTGTCATACAATCTCTTACAAGTTGCCATTTCCCAGCAAGTGGACTGCACAAGTTCTTACCAAATAATCATTCATTACCAATGGCCATGTGAGGAAGAGTCGTGTGCAAAGAACCAGATGACGATCGACGTACCAGCAGTGAAAGCAGTGCCTCATACAAACAGATGTATGTATCTCTCTCCCTTCACCTCATCCCTCTATTCTGCGTCCACATCTGTGTTTATAGTGAATGTGAATATCTCACAAGCAGAAAAGACCATAGAAAGGTAAAAGGCCACATCGCAAAacttaagacaaaacaatatAATGCTGCTCTTTGTGCTGTGGTTGCCAGCAACCATAGACCACTCtggaaacattttaaactgcaaaTGATCTTTTAGCAGAAAACATGCACAGTACACGTGAACTGTttgtccgttttttttttctgttcttcagCTGCTTTGATTCGaatgaacattttatgaaaaaggtCTGAAAAGAGACACAAAGAAGTCACCAGCCTGGTCTTTGACATTCAAAGCATGGGACATTTGATTGGGATATTGCCTAGTCGTTttgtcattatattattttctgtttgttgaAACAGGACCTCAAAACAACACAACGCATCacctcatttatttttttttttttttttttcataccaaAAACCTGGGGAGAATAAACTTCTTTTTGCACAATTGCTAACTAAAGAATAATCGGGTTAGTGTTGCTTATACTGTAAGAGTGTTTTTCGTTAGAAATAATTGTTTGAAAAGAGGGCGTTTGTCTACATCCTGCTCTGTCAGTGGGcttatcactatatatatatat

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247860.1 lncRNA upstream 45646 7866780 ~ 7868674 (+) True LOC122328944
XR_006247861.1 lncRNA upstream 45646 7866780 ~ 7868674 (+) False LOC122328944
TU230441 lncRNA upstream 513131 7400990 ~ 7401189 (+) True G155619
TU230289 lncRNA upstream 1075159 6836963 ~ 6839161 (+) True G155509
TU230505 lncRNA downstream 162 7920203 ~ 7921525 (+) True G155651
TU230496 lncRNA downstream 1981 7922022 ~ 7923577 (+) True G155645
TU230509 lncRNA downstream 9692 7929733 ~ 7932056 (+) True G155655
TU230519 lncRNA downstream 18565 7938606 ~ 7939756 (+) True G155660
TU230588 lncRNA downstream 64054 7984095 ~ 7985586 (+) True G155701
XM_043224568.1 mRNA upstream 92527 7815091 ~ 7821793 (+) True LOC122328711
XM_043224569.1 mRNA upstream 92527 7815098 ~ 7821793 (+) False LOC122328711
XM_043224443.1 mRNA upstream 140348 7766223 ~ 7773972 (+) True LOC122328639
XM_043224444.1 mRNA upstream 140348 7766227 ~ 7773972 (+) False LOC122328639
XM_043225223.1 mRNA upstream 149268 7731940 ~ 7765052 (+) True myt1b
XM_043224025.1 mRNA downstream 194900 8114941 ~ 8132951 (+) False slco4a1
XM_043224026.1 mRNA downstream 200185 8120226 ~ 8132951 (+) True slco4a1
XM_043225307.1 mRNA downstream 236152 8156193 ~ 8175519 (+) True ntsr1
XM_043225408.1 mRNA downstream 361185 8281226 ~ 8307764 (+) True LOC122329211
XM_043224225.1 mRNA downstream 401664 8321705 ~ 8333165 (+) True LOC122328506
TU230347 other upstream 609962 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 675401 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 1319585 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229052 other upstream 4217682 3694652 ~ 3696638 (+) False ube2t
TU230667 other downstream 411700 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 568045 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 1106467 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 1200843 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 1200843 9120884 ~ 9122393 (+) True G155927

Expression Profile