RNA id: TU230934


Basic Information

Item Value
RNA id TU230934
length 1510
RNA type TUCP
GC content 0.49
exon number 1
gene id G155927
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9120884 ~ 9122393 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGaattttatgagaaaaaaaatcgaACAGGttataaacatttacatataaaaatattgtcagACTCCAGAAATGCAGACACTGAACATGTCCATTCAAtatacaaaacattgttttaacaaAATACACTTAGAGAACTGTTGTATCAACTTGTGCAAAGAGTTTCTACCAaatgaaatatatcaaaacatttttaaacggTTTGCAAACCGCACATCCACTTTAAGATCCTTATTTCAATCCCAATGCacggcaaaaaaataaatatgctcatGTACCCTATCTTGGCGCTTTCTAAACATTAGCTGAAATTTATGGAAAGTTTGGACACTGACAACCTGCCAACAATCAAGTGCGTTTGAACATCTCTTCGTCTCTTGACTTTTTAAGTGAACATTCGGGCTAGTTTAACAGTGTAACAATGTTTCATTCGTGAACATCCACAGAACACGACTGTAAAGCCATTAGTCACAGTGAACAAACCGATGCAGTGAATGCAACATTTCGACCTAATTTCAAGCAGCCGGTCTGACTTGAAACGGCACGCTTAACATTTCCAAAGGTTAACGAAACAAGAACGGCGTATCTAGATCCGAATGAAATTTTTAGCCTACTTCTATTCAGTTTTCACGTGTCTGTCCGTCAGTCGTACGGATGGTGCCCCGGTTCGGGATGGCCGGTGTGCGGCGGGTAGCTGCAGGCGGAGATGGCGCTTCCGCCGGGGCTCACCGGAGGAGTCATGCCGCTTAGAGGCACCAGAGCGTTCGGATGCCGGTGGTACGGTCTGTAGGACGGGTGAAGGTGATGGTGTTGACCGTGGTAATAACTCACGGGAGAGTTGGCATAATCGTTTGGAGACAGAGGGCGCGCGTTACCAAGCATGGGCTGCAGGTAACCGGAGATGTGCGTCGGAGAGCTGGACTGGTGACTCCAGGAGCCGGTGTTGACGAACGGGCTTTGCCAATAAACGGGCTCCTGTTGCAGGCAGTACGAGTCGGCGAAGTTAAATCCAGACGGTAAGGGTGGCGGTCGGTAGGGTCTCTTAACGCGCCTCCTGCGCCTGTAATTACCCTTCTCAAACATATCGCTAAACGCTGGGTCTAGCGTCCAGAAGTTCCCCTTCCGTTCCCCGCCGCTCTCCCGGGGAATCTTCACGAAGCACTCGTTGAGGCTCAGATTGTGCCTGATGCTGTTCTGCCACCCTTTTTTGTTCTTCTCGTAGTACGGAAACTTGGATATGATGAAGCTGTAGATGTCATTCAGGGTCAGCTTCTTCTCCTCGCTCTCTCTGATGGCCATTGCAATGAGAGCCACGTACGAATAAGGAGGCTTTTCTGGCGCTGGAGCGGCTCCTCCATCCGCGGCACCCCGGCCGTCCGCTGCGGTATCGCGGGATTGCGGGTTATCAGTCCCCGCGCTGCGATCCATGAGATGGGCTTGAGCTGGATGAATGAAAAGGCGAGATTGTACAAGCACGAGTGCAAAGTTAAAAGTGTCCAGGTGTGCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230844 lncRNA upstream 19512 9016267 ~ 9101372 (+) False lzic
TU230845 lncRNA upstream 39402 9029529 ~ 9081482 (+) False lzic
TU230841 lncRNA upstream 87786 8941031 ~ 9033098 (+) False lzic
TU230880 lncRNA upstream 114146 9005042 ~ 9006738 (+) True G155894
TU230818 lncRNA upstream 181178 8915357 ~ 8939706 (+) False G155850
TU230853 lncRNA downstream 6307 9128700 ~ 9131075 (+) True G155868
TU230837 lncRNA downstream 13023 9135416 ~ 9138190 (+) True G155860
TU231009 lncRNA downstream 90762 9213155 ~ 9213707 (+) True G155984
TU231010 lncRNA downstream 91747 9214140 ~ 9214454 (+) True G155985
TU231076 lncRNA downstream 461776 9584169 ~ 9584580 (+) True G156034
XM_043224221.1 mRNA upstream 91683 9026485 ~ 9029201 (+) False lzic
XM_043224615.1 mRNA upstream 196613 8919723 ~ 8924271 (+) True tardbpa
XM_043224614.1 mRNA upstream 198361 8919719 ~ 8922523 (+) False tardbpa
XM_043224073.1 mRNA downstream 22627 9145020 ~ 9147322 (+) True aurkaip1
XM_043225439.1 mRNA downstream 25530 9147923 ~ 9155012 (+) True mxra8b
XM_043224733.1 mRNA downstream 34101 9156494 ~ 9186875 (+) True dvl1a
XM_043224734.1 mRNA downstream 34101 9156494 ~ 9186875 (+) False dvl1a
XM_043224462.1 mRNA downstream 66981 9189374 ~ 9193433 (+) True tnfrsf9a
TU230843 other upstream 87786 9026508 ~ 9033098 (+) True lzic
TU230751 other upstream 632243 8488086 ~ 8488641 (+) True G155799
TU230667 other upstream 787508 8331741 ~ 8333376 (+) False LOC122328506
TU230347 other upstream 1816526 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 1881965 7225994 ~ 7238919 (+) True G155561
TU231143 other downstream 601825 9724218 ~ 9769620 (+) False G156081
TU231144 other downstream 601825 9724218 ~ 9769620 (+) False G156081
TU231145 other downstream 608370 9730763 ~ 9769620 (+) True G156081
XR_006247904.1 other downstream 712703 9835096 ~ 9835170 (+) True LOC122329334
XR_006247902.1 other downstream 713002 9835395 ~ 9835479 (+) True LOC122329332

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044271 True 861 mRNA 0.56 1 NC_007134.7 29823286 ~ 29824146 (-)
grasscarp (Ctenopharyngodon idella) CI01000001_11953793_11954834.mRNA True 1966 mRNA 0.44 2 CI01000001 11953552 ~ 11955605 (-)