RNA id: TU230841


Basic Information

Item Value
RNA id TU230841
length 3428
lncRNA type sense_over
GC content 0.40
exon number 3
gene id lzic
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8941031 ~ 9101372 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttttttttttttttttttttttttttTTATTCCCATCTCATCCTTTATTTTGTTCATGAGCAAGCATCAACTTCACTATAATTATTCCTCTGAATAATAGAAAAGTGAATGAGCTGGAAGGCAGCATCCAACAGTTCTACAACATCCCCCGGTTTTCATTTCtagagcaaaaaaataaaagtaatcaaaacGTGAACAATGACCACTGAAGGCTGCAAATCTGAGACAGATAATCTTTGATTCAGTAGTATCCTCTCCCATCTACTCCACTCCAAACCCACAGTACCATGTGCCAGTTACAGGAAATATTTATATCTTGTGTTATACATGCAAAGACAATGCCCCATTAGACACCCACCATCTGCAGCCGTTCACGCTCGGCACagactgcttttttttctttattatggaAAGTTTCTGCGCCAGCGTCTTAAAATCACATTGTTTGAAATACAATTCACGTGATTTTTCCCTTGAGAACCTGCAGATGAATATTTGCATCAGGGGAAAGGAGGGAAGATACAAACAATTGTGCGATTTTTCAGTACAAACATTGATTATACTAAATTTGGTCTCATGGAATGGTCTACATCGCGAGTCGAGAATACACTGTGAGAGACTATAACGTTTGTGTGACGAGTCATCATGTATTTGCTTCTCGTGAATTTCATGCTGCCCTCTACAGCGTTATCAGGAGATACACCTTTCACTATACACATATCATACCCACATATGCTGCCTATAATAATGTACATCTTTTCGAAAGTGGATTTCCTCAAACATGATTTAGTACAATATTCATTGATGATACAGTATGGACCTATTATTTTTCTCTACACATCAACATGAACACAAGACGTCTACTGTATGCGGGACAATTAAAACGTCCGCTCTTGATAAAACTAGCTGTTGATCCCTAacagaaaatctaaatcaaattaaaatcactTCCCCGTACCTATAAAGAAATCTAATATactaaatcattataaaatgagaaaattgcAACAACTAAAATGGCATGGATGAGTGTTTGGTTAGTCGTGTTATTAATGCGCTGTGATAGGCAAAAGGCACTCCCACAACTCCACCAGCTGATTTCTGgatctctttttaaaaagtccTGTCAATTTTGAGGGGGATCCCGATGACCAAAACACGGAACAAAACCTAAAACCGTCGCTCTCTCATGGGTCACAAAAATAGACCTTCTCGACAGCTTCCCGCATTGTACCTTTTCTGACGTAACACAAAATTATATTCGTACCACCAATCGTAACAGAGCCTTGTAGCTTAGGCCTGAAACAGAGAATATTcatgcatgtaaacaaaaaacagctgaaTGAAGTACCCTAAAGCTTCGCGTCCGTCTTGGCTAAACAATCAAACGATGTACAATCTCCTGAATAATTAACATTCTTTTTCCTCGAGCCCAGCGGGAACGGAACATCATTTTCCCCAATGGCTTAACCGTTTTCGGAGGGGGTGCGTCCCGAAATGTCCAATCACAGTAAGAGAATGAAACTATGACATGATTCTGAAGAGAAATGACCTGCAAATCTGGAGTAGATTGATAGCGTCAccgaaaaggaataaaagtttaccaaatgtaaacaaatatctTTACACAACTCTACAGTACAGTTCCATGTACAATAAAATCCAACGGCcatactgcaaaaatattttatgctttaaaagttgaaaTTCGTTTCTTTTAATGCGCTGTGATAGGCAAAATAGCCCTTGTAATGCTTTTAAGGGGCCTTGAAATGAGTAGCACGGGTTAACcctgaatttaaaaattaaaaaaaggaaaaatcactttaaaatacaaaattaggtatatatgaaataaaaacaacccCTCCCCCCCACGCAATTTTGTTCAGTTAAAGTTATACAACTTAGCAATAGAGGTCTGTCAAAACAGTACACAACAGACCTTTCGATGCTCACATTGTCGATAAATCACCAGCGCACCCGTTTTCCACGTCGTTTCAGTCGTAATTGTTATTCAGACTGGGTTATGAGAGTGCGTCCTGTGATTCAAATTGgtctctatttatttattacagaaaataCAAGCACTATCACTTAAGAATGGCTTAAATAACTGCGGTGTGCCTAAACTGTACAACATACAGTACCACgcgaaaaaaacaacaactgtataTTCATCACCTGAATGTGATTTGTTAGTCCCCAAAACGTCactgaattaaaacattaaagcctCGGTGTAGCATTTGTGCCATTGCAAGCCCAGCTAGAATTAGCATATGTAAAGCCAAAGCACTGAACCGACTCTACGCCCATCCAACACTACGAAACAGAACGGaaccaaacaaaaaagatgCACACCCACCTCCaagagaaaagacaaaatgaaCGACACTTTGCCACAGAAACCTCAGCCTCTGTCATGGGTTTCTCTCTGTGAAgcggacattttttttttttttttttttacgagcATGAGATTTACTGAAAGTTTCTGAAACATGCTAAGAGCATCTGACATAAATATTCTACAGCAGACACTGTGTCTTTTTAGATAACGGAAACCGCTGGTTAGGCTTTCACTAACACACATCGACTAATTACATGGTTTCGtcttatttacaaaatatcaaaaagctGTTGTTTTCTTCCGTACCCATGATTGCAAATCTTGCCATGCAATATAAAGTGAATTTCCTCAAAATTCCTGTAGCAAATCAACCTAAATGTGCAAGgattatacattaaaatcattCTCGAAGCTCAACTTGAAAGTAAAAAGTGCAGGGATGTGTCCGTACAGAGCTGAAAGAAAATGCGAACGCGGGCCAGGATTCCCTCGGAGAAGACAGAAAAAGATTCAATAAATTAGGAACTTGTATTGAGATAGCTGTGATACTATACTACACTGAATACCACCACGATAAGATGTCGATAGGGAAGCCTTGGCGGGTGGAAATGAAGCGGACTGCAACACCTGTCACGACAGACACCGGATATATTCGCATCTATATTGTACATATATTGTATAATCGTttagttttcagtgttttccgCGTTTTTTTTACGCATGGCTCCTTAGGTAGGGGGAACATGGGCGTCCCTATTGGCAGAGGGATGTGACATGGGTGGATTTGTCactgtgtgagagcgtgtgtgtgtgtgtgtggtgtgtgttggtaagtagtgtgtagtgtgtgctCAGGAGGATCAGTAGGTGGAGTCGTCCCACTCCAGCTGCTGCTGTCTGTTCGAACCCTGCTGGTCTTCCTGTTCGCCGCCCTCATCCTCGCTGCTGTCTGACTCCGCACTGGTGATGTCGTCTTCCTCCTCTCCGTCCTcgctctcttcttcttcttcatctcctTCCTCTTCGCTGCTGTGCTGATCCTCATAAGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230818 lncRNA upstream 1325 8915357 ~ 8939706 (+) False G155850
TU230817 lncRNA upstream 2656 8821438 ~ 8938375 (+) True G155850
TU230819 lncRNA upstream 3064 8901014 ~ 8937967 (+) False G155850
TU230820 lncRNA upstream 9182 8929744 ~ 8931849 (+) True G155851
XR_006247812.1 lncRNA upstream 240209 8698178 ~ 8700822 (+) True LOC122328608
TU230853 lncRNA downstream 95602 9128700 ~ 9131075 (+) True G155868
TU230837 lncRNA downstream 102318 9135416 ~ 9138190 (+) True G155860
TU231009 lncRNA downstream 180057 9213155 ~ 9213707 (+) True G155984
TU231010 lncRNA downstream 181042 9214140 ~ 9214454 (+) True G155985
TU231076 lncRNA downstream 551071 9584169 ~ 9584580 (+) True G156034
XM_043224615.1 mRNA upstream 16760 8919723 ~ 8924271 (+) True tardbpa
XM_043224614.1 mRNA upstream 18508 8919719 ~ 8922523 (+) False tardbpa
XM_043224613.1 mRNA upstream 18508 8919720 ~ 8922523 (+) False tardbpa
XM_043224612.1 mRNA upstream 18508 8919721 ~ 8922523 (+) False tardbpa
XM_043224775.1 mRNA upstream 251198 8629204 ~ 8689833 (+) True pex14
XM_043224073.1 mRNA downstream 111922 9145020 ~ 9147322 (+) True aurkaip1
XM_043225439.1 mRNA downstream 114825 9147923 ~ 9155012 (+) True mxra8b
XM_043224733.1 mRNA downstream 123396 9156494 ~ 9186875 (+) True dvl1a
XM_043224734.1 mRNA downstream 123396 9156494 ~ 9186875 (+) False dvl1a
XM_043224462.1 mRNA downstream 156276 9189374 ~ 9193433 (+) True tnfrsf9a
TU230751 other upstream 452390 8488086 ~ 8488641 (+) True G155799
TU230667 other upstream 607655 8331741 ~ 8333376 (+) False LOC122328506
TU230347 other upstream 1636673 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 1702112 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 2346296 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230931 other downstream 87786 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 87786 9120884 ~ 9122393 (+) True G155927
TU231143 other downstream 691120 9724218 ~ 9769620 (+) False G156081
TU231144 other downstream 691120 9724218 ~ 9769620 (+) False G156081
TU231145 other downstream 697665 9730763 ~ 9769620 (+) True G156081

Expression Profile