RNA id: TU230820


Basic Information

Item Value
RNA id TU230820
length 316
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G155851
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8929744 ~ 8931849 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCTGATATCCTCAAGAAACTGTGCCTTGTTTCCGGTGAACTTGACACCCTGGGGGCCGGTGAGGCTCTTACTGGCCTGAACCCTCTCGTCCTTCAGAGAGGAGAGACATCTGGCAAAGACAGCTTCCCCTGTGAGTAACAGGTGTGCCGTACTCCAAAGCGGAGATAGCCGTCCATTTCCCTGTGCCTTTTTGCCCAGCGCTGTCTCTGATTTTGGGCAGCAGGTTAGTGCCATCCTCGTCCTTGAATTTCAGGATATTGGCAGTGATCTCAATGAGAAAAGAGTCCAGTTCCGTCTTATTCCACTGATCGAAG

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247812.1 lncRNA upstream 228922 8698178 ~ 8700822 (+) True LOC122328608
TU230793 lncRNA upstream 238644 8690885 ~ 8691100 (+) True G155830
TU230792 lncRNA upstream 300679 8628793 ~ 8629065 (+) True G155829
TU230785 lncRNA upstream 304108 8624905 ~ 8625636 (+) True G155824
TU230784 lncRNA upstream 304955 8624130 ~ 8624789 (+) True G155823
TU230841 lncRNA downstream 9182 8941031 ~ 9033098 (+) False lzic
TU230880 lncRNA downstream 73193 9005042 ~ 9006738 (+) True G155894
TU230844 lncRNA downstream 84418 9016267 ~ 9101372 (+) False lzic
TU230845 lncRNA downstream 97680 9029529 ~ 9081482 (+) False lzic
TU230853 lncRNA downstream 196851 9128700 ~ 9131075 (+) True G155868
XM_043224615.1 mRNA upstream 5473 8919723 ~ 8924271 (+) True tardbpa
XM_043224614.1 mRNA upstream 7221 8919719 ~ 8922523 (+) False tardbpa
XM_043224613.1 mRNA upstream 7221 8919720 ~ 8922523 (+) False tardbpa
XM_043224612.1 mRNA upstream 7221 8919721 ~ 8922523 (+) False tardbpa
XM_043224775.1 mRNA upstream 239911 8629204 ~ 8689833 (+) True pex14
XM_043224221.1 mRNA downstream 94636 9026485 ~ 9029201 (+) False lzic
XM_043224073.1 mRNA downstream 213171 9145020 ~ 9147322 (+) True aurkaip1
XM_043225439.1 mRNA downstream 216074 9147923 ~ 9155012 (+) True mxra8b
XM_043224733.1 mRNA downstream 224645 9156494 ~ 9186875 (+) True dvl1a
XM_043224734.1 mRNA downstream 224645 9156494 ~ 9186875 (+) False dvl1a
TU230751 other upstream 441103 8488086 ~ 8488641 (+) True G155799
TU230667 other upstream 596368 8331741 ~ 8333376 (+) False LOC122328506
TU230347 other upstream 1625386 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 1690825 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 2335009 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230843 other downstream 94659 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 189035 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 189035 9120884 ~ 9122393 (+) True G155927
TU231143 other downstream 792369 9724218 ~ 9769620 (+) False G156081
TU231144 other downstream 792369 9724218 ~ 9769620 (+) False G156081

Expression Profile