RNA id: TU951323


Basic Information

Item Value
RNA id TU951323
length 264
lncRNA type intronic
GC content 0.42
exon number 1
gene id G836404
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70274673 ~ 70274936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcagagtataacacagtcacatccacaaacagcagaatacaacacagtcacatccacaaacagcagaatacaacacagtcacatccacaaacagcagaatacaacacagtcacatccacaaacagcagaatacaacacagtcacatccacaaacagcagaatacaacacagtcacatccacaaacagcagactacaacacagtcacatccacaaacagcagaatacaacacagtcacatccacaaacagcagaatacaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU951302 lncRNA upstream 9462 70240306 ~ 70265211 (+) True G836385
TU951299 lncRNA upstream 39318 70234961 ~ 70235355 (+) True G836382
TU951298 lncRNA upstream 40834 70233634 ~ 70233839 (+) True G836381
TU951276 lncRNA upstream 94028 70180354 ~ 70180645 (+) True G836359
TU951267 lncRNA upstream 106891 70167566 ~ 70167782 (+) True G836350
TU951332 lncRNA downstream 11003 70285939 ~ 70321540 (+) True G836412
TU951371 lncRNA downstream 93764 70368700 ~ 70369545 (+) True G836447
TU951375 lncRNA downstream 98385 70373321 ~ 70373844 (+) True G836449
TU951399 lncRNA downstream 145957 70420893 ~ 70421314 (+) True G836451
TU951400 lncRNA downstream 147677 70422613 ~ 70425804 (+) True G836452
XM_036988862.1 mRNA upstream 529387 69643342 ~ 69745286 (+) True LOC110531260
XM_036988861.1 mRNA upstream 655418 69464993 ~ 69619255 (+) False LOC110531259
XM_036988860.1 mRNA upstream 655418 69465430 ~ 69619255 (+) False LOC110531259
XM_036988859.1 mRNA upstream 655418 69510091 ~ 69619255 (+) True LOC110531259
XM_021616908.2 mRNA upstream 866473 69384397 ~ 69408200 (+) False LOC110532768
XM_021616937.2 mRNA downstream 96209 70371145 ~ 70376083 (+) False LOC110532792
XM_036988875.1 mRNA downstream 96209 70371145 ~ 70376083 (+) True LOC110532792
XM_036988876.1 mRNA downstream 116183 70391119 ~ 70416968 (+) False LOC110531266
XR_005053350.1 mRNA downstream 116183 70391119 ~ 70416968 (+) False LOC110531266
XR_005053351.1 mRNA downstream 116183 70391119 ~ 70416968 (+) True LOC110531266
TU951291 other upstream 65038 70208678 ~ 70209635 (+) True G836374
TU951181 other upstream 241446 70032992 ~ 70033227 (+) True G836274
TU950024 other upstream 906885 69287276 ~ 69367788 (+) True G835268
TU950033 other upstream 1008199 69261171 ~ 69266474 (+) True LOC110532770
TU950020 other upstream 1030195 69242214 ~ 69244478 (+) True G835266
TU951966 other downstream 479415 70754351 ~ 70759695 (+) False LOC110532786
TU951967 other downstream 479415 70754351 ~ 70759643 (+) True LOC110532786
TU952565 other downstream 957850 71232786 ~ 71233424 (+) True G837369
TU952646 other downstream 1106223 71381159 ~ 71381658 (+) False znf335
TU952642 other downstream 1108963 71383899 ~ 71384463 (+) True znf335

Expression Profile