RNA id: XM_036988876.1


Basic Information

Item Value
RNA id XM_036988876.1
length 5334
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110531266
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70391119 ~ 70416968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaagttcAAAATCTATTTTTTTAAAGTAGCTAAATTTGTCGTTAGGTGCTGTTTGAGAAAAAATAAGTTGCCAAATCTAACAAACATAATTGCTAAATTGGCATCACTGATTCGCCAGTATCCTCAGGATGACGACCGGGACGAACGGATTTTGGTTCCTTTCACGTCACGAATGACACGTGTATTCAAGATGGCGGCCGCGGCGATGGCGACGTGGTTGGCCCTTCTGCTGTTGTCCTTGTTGCCTGGAGGAGTCCAGGCCTTTTACGTGCCTGGAGTTGCTCCTATGAACTTCCACCAGAACAGTGCTGTAGACATTAAGgccgtGAAGCTGACCAGCTCCCGGACTCAGCTTCCCTATGAATACTACTCCTTGCCCTTCTGTCAGCCTGATAAAGTGGTCTACAAAGCAGAGAACCTGGgggagGTGTTACGCGGGGACCGCATTGTCAACACCCTGTACTCGGTACTCATGACCCAGGACAGGAAGTGTGAGGTGGTTTGTGCCAAGCTGAAACTCAACGTGCAGCAGAGTAAGCTGGTGGCTGAGCGAATTCAGGAGGAGTACTATGTTCACCTCATTGCAGACAACCTCCCAGTGGCTACGCGGCTGGAGTTCAACCCCAACATAGAGGCAGGGGCTGAGGACAAGGAGGTGGTGAAGGATGTTCAGTTTGAACACGGCTACAGGTTGGGCTTCACTGACAACAACAAGTTCTACCTCCACAACCACCTGTCCTTCATCATCTACTACCACAAAGAGAAgctggaggagggggaagagcaCAACTACAGAGTTGTTCGTTTTGAGGTGGTTCCCCAGAGTGTCAAGGTGGAGGACCTAAAGGTGGCTGATAAGGGGTCGTGTACCCTGCCCGAGGCCACTAACTCAGCTCCTCAGGAGATTGACCCCTCCAAGGACAATGAGGTTCTCTTCACCTACTCTGTCCGCTGGGAGGAGAGCCAGGTGAAGTGGGCATCTCGCTGGGACACCTACCTGACCATGAGTGACGTGCAGATCCACTGGTTCTCCATCGTCAACTCAGTGGTGGTGGTCTTCTTCCTCTCTGGGATCCTCAGTATGATCATCATCAGGACCCTGAGGAAGGACATCGCCAACTACAACAGAGAGGATGACATAGAGGACACCATGGAGGAGTCGGGCTGGAAGAATGTCCATGGCGACGTGTTCAGACCTCCACAGTATCCCATGATCCTCAGCTCTCTGCTGGGCTCAGGCATACAGCTCTTCTGCATGATCCTCATCGTTATCTTCGTGGCCATGTTGGGGATGCTGTCGCCTTCCAGTAGAGGGGCCCTGATGACCacttcctgcttcctgtttaTGTTCATGGGTGTGTTCGGTGGATACTTTGCCGGCAGACTCTACCGCACGCTGAAAGGCCATCGGTGGAAGAAGGGAGCGTTCTGTACGGCCACTCTGTACCCAGCCGTGGTCTTCTGCATCTGCTTCGTTCTCAACTGTTTCATCTGGGGAGAGCACTCGTCTGGAGCAgtccccttcaccaccatgCTGGCTCTACTCTGCATGTGGTTCGGTATCTCCATGCCGCTGGTCTACTTTGGCTACTACTTTGGCTTCCGGAAGCAGCCGTACGATAACCCCGTCCGCACCAATCAGATCCCTCGCCAGGTGCCTGAGCAGCGCTGGTACATGAACAAGTTTGTGGGcatccTGATGGCTGGGATTCTACCGTTTGGTGCCATGTTCATTGAGCTCTTCTTCATCTTCAGTGCCATCTGGGAGAACCAGTTCTACTACCTGTTTGGTTTCCTCTTCCTGGTGTTCATCATCCTGGTGGTGTCCTGCTCCCAGATTAGTATCGTCATGGTCTACTTCCAGCTCTGTGCAGAGGActaccggtggtggtggaggacctTCCTGGTATCAGGGGGCTCAGCCTTCTACGTCCTTGTTTATTCTGTTTTCTACTTTGTCAACAAGCTGGACATCGTGGAGTTTATTCCTTCGCTGTTGTACTTTGGCTACACGGCTCTCATGGTCCTGTCCTTCTGGCTCCTTACAGGGACCATCGGTTTTTACGCAGCGTACATGTTCATACGGAAGATCTACGCTGCCGTCAAAATCGACTGAGTTTGTTTccgctgtttgttttgttttttttgtcacattatttttcattttttacatttttattcttTATGTCCAGCAATCACTGGCTTGTGTGTGTGGACACATGGACGTGTGAGGTGGTGTTTGTGGAACAGAGACCCCCCCCCTCAATAGGCATGGAGAGACGACAGTAAGATGGCGCGCAGAATGCAAACTCAACGATCTTCCTCCCTGTTATTGGATGTCCAGAGACACAGAGATTTCCTATTGGACAGTCaatgttttctactgtgtttcacCTTGTACACACAACATGGGCCAAAGCATGTCAGATGAAACGGTCTCTGTTCAACGTACAGTCTGCTTTTGGAGCAAGCCTGGGTTCCACAGGACGACTCCAGTGCATTTGGTTCAGAATTGACCTTTATTGTTTTAAAAATCAGTAAGATATTTTAGTCGTAacttctttcacacacacactctctctctgtaaagTTAGTTTATTTATCTTTATTCCAGATACGTTTATGATCAGAGGTCATTGAGAGGTCACTCGTGTAACGTGGCTAATGAGTATTATTTTTGTCTGAAAATATGCTGGGAAATGGACATCTAACGTTGGAACAGGCATGGATATTAAAatattctgttttttgtttttttacttcaATGTGACCATTTtctaaaatctaaaatcattCTAAATTTGACTCCCTGAAAACGATTGTCTCTCACATTAAGGTAACAAGATTGTCTAAAATGTATCTTTTTAAAGCGACCGGATTTCGATGTGGAGAAGCATACATTTAATTTTCTCTTTTAAATACTACTTGCAGGGAAGCCACTTTGGCTTAAGACTGTTGAAATATGAAATGTTATGGAACGAAAGTACATTTTGATGAAAAGTAGTATTCCTTCAAATCACCTATATAATTTCTGGTCTTTAACCTAAAAGGGTTGGACACATTGCGTTACTAGGTGATGTGAGCAGCTCCATGGGCCCACTGAACTATGCATTTTTCTGTAAGTAGGACTGTTCTTTGGTTTCAAAAGGTCATGTTACATGCTTTAAGTTGTCAGTGAGACACTGCTATTCTAACTGTCGTTGTCGGTTGTCCCTGAGCATCAATGTCTTCTCGGATTACCTTAAACATGATTCTGTCATTGAGCGTCTAAGTGGAGTACAGTTATTCCCCATAAACCACGAGCCAAGTCGCTGCCGTGTAAGATTGACAATGTGGTTTAGATTGTCGGTAGGTTCGAGAAGGTACTACATGTCAACCTATTGTATTAATGGGCAGATCCTTCACTGGGTTTTACTCTCTGTTACCCGGCTAGAATTCCCCACCAGTGGTTCTCGTCGTCTTGTAGATGGAGTTCCTCTTGATTGTGGAGTCTGAAATGCAGAAGATCCTGTAAACTAGTAACACTGGACCTACACAACTGAATGAAAGTGGGGTGAATGAGATTCAGAATATTCCAGACCTTTTCGATCATGGGTATATGTTTACTACCAGTTACTTTATTCTATGGGCCAGTTCCTCAGACCCAGATTAAGCCCGGTCCTGGATTAAACATCATTCCCATTGAAAGGTCATTTTGAGTCCAGGAATAGGTTTAATTTAGGTCCAGGAATAGGTTTAATTTAGGTCCAGGAATAGGTTTAATTTAGGTCCAGGAATAGGTTTAATTTAGGTCCAGGAATAGGTTTAATTTAGGTCCAGGAATAGGTTTAATTTAGGACCAGGAATAGGTTTAATTTAGGACCAGGAATAGGTTTAATTTAGGTCCAGGAATAGGTTTAATTTAGGTCCAGGAATAGGTTTAATTTAGGTCCAGGAAACTGGGTCTTTTATGTTTGAGAGCTGAGCTTTCGGGAATGCAACCTTTTAGGTCAATGTTATTATCCTGCTAGTTTTTCCTTGATGAAGAGCATCGCAACCAACCATAGGACAGTCTGGTGGAGGTCTTGCCCAGCAGATGGTGTTGGGATAGAGCTgcactggaagagagagggatcgaACAGGTGCAGAGGGGGAATTACTCCATTCACCATGTAGTGTATCACTGAATGAATCATACTTCTACACTCTCACTTAGTCTCTCGCATTCTCTGCCCTCTCACACATTCACCTCCACAGTCAGTATTGCATCGGTCTTTTTCTTCCCTCTGTAAAGctttgttcacactgcaggccttaatgctcaaatcattattttttttttcaacaacaacTTGCAGTTAAGTTGTCCTAACAGCAAGTTACAAATGACCAAATTAgatgtgtgttcagacagcagtcatttgctgacacggctacgctagttgtcatagtaacgacAGGGGTCTTTGGTGTCGtctgattggtggtggtgctccTGCTTCCCatcactcagaagttatgtaACAACCTAAGGTGATGACCACAATGTGTCGTCATGGAagtttcccagttgctttgaatgttgaAAATCATAGTGTATAAACACTTTTAAAGCCTCAAAGGACAaagatgatccaactttcaaaacaaaTCATTTTTGGTTATCCACAgaagttaactagctagctaggtagctgtttagctttTTAGAACATTCACTAATTTGTTTTGTAAACAACCTAGTTAGTtaccacatgttcttgtcaaactgtcaacagagtagctagcaagcatCAAGATATGCCAAATAACAGTCTTAAAAACCAATTGAGGGCACATGAAAAAGCCATGGCTGGGAAGATGGCTTGAAATATCAGATTCCACGTACTTTTTGGCCGTTTAGACTGCAGGAAAAAGAACAGGTTTGAAttgaatatgcaaataaattgtatttgagtcacttcaaactgccagtGTGAACCAGGCTTTAATGTCAACAGTGTTCCTGAGCTGCCAGCTCTCACGGCTCTCTGATTCAGAGACGGACAGACTTCCTCACCTGGGCCCAACAAACAGATTTCTGGAGAGATTTCCTGCAGATGTACATTTGACTGACAGGAGccgttgtatgtatgtatgtatgtatgtatgcgtgtgaATGAGTGTTGACTGTGTGAATACAACACGTTGTATTGCTGAGGTTTGCTGTAGTGGGGACTCTTGACTACATAAATATCATGTCGTTGTTTTAGCCAAAAGCATTACTTTTAAGAACCTGTTTCTTGTCCCCTTTTCTTTACAGAATGCCCAGTGATATAATTTATGAAACTAATAAACTGATGTGATGTTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU951375 lncRNA upstream 17275 70373321 ~ 70373844 (+) True G836449
TU951371 lncRNA upstream 21574 70368700 ~ 70369545 (+) True G836447
TU951332 lncRNA upstream 69579 70285939 ~ 70321540 (+) True G836412
TU951323 lncRNA upstream 116183 70274673 ~ 70274936 (+) True G836404
TU951302 lncRNA upstream 125908 70240306 ~ 70265211 (+) True G836385
TU951399 lncRNA downstream 3925 70420893 ~ 70421314 (+) True G836451
TU951400 lncRNA downstream 5645 70422613 ~ 70425804 (+) True G836452
TU951415 lncRNA downstream 44343 70461311 ~ 70508059 (+) True pofut1
TU951428 lncRNA downstream 72156 70489124 ~ 70491536 (+) True G836474
TU951414 lncRNA downstream 92112 70509080 ~ 70509496 (+) True G836465
NM_001165184.1 mRNA upstream 12745 69312325 ~ 70378374 (+) True tnr5
XM_021616937.2 mRNA upstream 15036 70371145 ~ 70376083 (+) False LOC110532792
XM_036988875.1 mRNA upstream 15036 70371145 ~ 70376083 (+) True LOC110532792
XM_036988862.1 mRNA upstream 645833 69643342 ~ 69745286 (+) True LOC110531260
XM_036988861.1 mRNA upstream 771864 69464993 ~ 69619255 (+) False LOC110531259
XM_021616935.2 mRNA downstream 84468 70501436 ~ 70508110 (+) False pofut1
XM_036988887.1 mRNA downstream 93155 70510123 ~ 70516707 (+) False kif3b
XM_036988885.1 mRNA downstream 93155 70510123 ~ 70521031 (+) False kif3b
XM_036988886.1 mRNA downstream 93155 70510123 ~ 70521031 (+) False kif3b
XM_036988894.1 mRNA downstream 310927 70727895 ~ 70749329 (+) False LOC110532787
TU951291 other upstream 181484 70208678 ~ 70209635 (+) True G836374
TU951181 other upstream 357892 70032992 ~ 70033227 (+) True G836274
TU950024 other upstream 1023331 69287276 ~ 69367788 (+) True G835268
TU950033 other upstream 1124645 69261171 ~ 69266474 (+) True LOC110532770
TU950020 other upstream 1146641 69242214 ~ 69244478 (+) True G835266
TU951966 other downstream 337383 70754351 ~ 70759695 (+) False LOC110532786
TU951967 other downstream 337383 70754351 ~ 70759643 (+) True LOC110532786
TU952565 other downstream 815818 71232786 ~ 71233424 (+) True G837369
TU952646 other downstream 964191 71381159 ~ 71381658 (+) False znf335
TU952642 other downstream 966931 71383899 ~ 71384463 (+) True znf335

Expression Profile