RNA id: XM_021616937.2


Basic Information

Item Value
RNA id XM_021616937.2
length 2193
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110532792
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70371145 ~ 70376083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGAAGTGTATTCTGCTGTCATTGTTTCATTCAAGTCAACTGTTTCCGTGTACTTAGCTACTAGCTAACAGAGCTGTCAAGGCAGGCAATATGAACATTTAAATAACTATGCCAAACTGTGACAAGTTTGGAAAAGTGTCTTAGTCAGACAGTTTGTGTAGACATGGATTGACGAGTTATTTTTCAAGGACCTGTCGTGCCAACTTCCCGAGCCCTTGCTACGCTACTCGGCGTCCAGCCATGCCTCTCGTCGGTGCAAACCAACCACAGTTGATTCGTTCAAGTCAGAAGGACGAATATTATCAACAGTGTCTCAGGAACAACGCGAATGAAGCTTTCCAGACTCTTGCAGGGTCCAAGAGATGGCTGCACTGGAGAAAAGAGATCCAACTCCTGTCAGACCTGGCATACTATGGTTTAACCACATTCTCAGGGTACCAGACGTTGGGCGAGGAGTATGTCAGTATCATCCAAGTGGACCCCACTCTGCGCAGGGTACCGTCGCGTGTCAGACGAGGAGCCCTGGTGCTCCTCCACAGCCTGTTTCCATACCTGCTGGACAAGCTGCTGGTGTGCCTGGAGAATGAgctggaggtgggggaggaggagagccaGGGAGGGGGAATCCAGAGAGCAACAGTTGCCAGTCCTTGGAGCCCCGGAGCCTGGATGAGAGGCTGGGTCCGGAGGGCGTTGGGGCTGCTGACGGAGCCCCAGAGGAGGGCGTGTGTGCCGGCCGTGTTGGCCCTCCAGCAGGGACTCTCCATTCTCCACCGGGTGCATGTGGCCTTGTTTTACATCAGCGGGGCCTTCTACCACCTGGGGAAGAGGACGGCCGGAGTGAGCTATCTGCGGGTACGTGGTGTGACGGGGGACGACGGGGACATCCGGAGCAGCTACAGGCTCCTGGGCGTGATCTCCCTGATGCAGCTGGCCCTCACGCTGGCCCTGCAACTCAACAACCTCCGTCAGAGACAGAGAGCCCGGCAGGAGTGGAGACAACACAGGAACCTGCCCTCCAGgtcccAATCTGTAGACGAGACTGACTCTCCCCGTGCCTCTCGCTGTATCCTGtgtctagaggagaggagacactcGACCTCCACCCCGTGTGGTCATCTGTTCTGCTGGGAGTGCATCACAGAGTGGTGCAACACCAAGACGGAGTGTCCTTTGTGTCGTGAGAAGTTCCAGCCTCCTCGACTAGTCTACCTGAGGAACTACTAGCCGAAGAGCCAGAACTTCTGACGTGGCTGTTCTTATTATGTGGCTCACTATTATGTGGCTCACTGAGTCACTATGTGGCTCACTACATGACTGGATCGCCACATTGGACTGTTGAATCGTTAAACACAACTGTTTACTCTTTATCAGAGTTTAGCTATCCCTTGTTGAGGTCCGATCTGAATAGCATCTCACTTAGAGAATGGCTCGAGATCTTATTTTGGGGCGTTAATTCAGATATTGCCCGTGTCAAGATATGTCCAGTATGAAAGAAAATGTGTGCATGAAGCATTTAATTGTTTTTGTAGAAGAAAACACCTTTCAGTATACAGAATATTATTGTAAAGATCTGTACAACACTGTCCTCAGCCCTTTCATTCTGTGTCAGGGCTACACACTGGGATAATTTGTAGGTAAtggctatatatattttttaatttatttgatAATGTACTGTTTCTACATTTTATGAGAATACGTAACGCAGTGCACTATATTGAACAATCATACATGTTTCAATGGTTTGCATATGAATCGTGTTGGATTGCATCAGTCTGTAACTGATCTAAATGTGTACATTTAAAACAATGACTAATCAACTATGCTAACAGTGGAATTATTTACAAGGCGACTAGTATATTGTGTACATTATGGCTGTTGTCATGGATCAGTAATGTATTAGCTCTGGCCTACAGAGGGGTAtgctacaaagcaggatcaatgagttagccgaCCAACTTttgataaacaaacaaaaatatagattttttttctggttcatttggggcggcagggtagcctagtggttagagcgttgttcaaacccccgagctgaagGGGTAcaaatgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgtaaataataatttgttcttaactgacttgcctagttaaataaagatacaatAAAAAAGAAACTTAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU951371 lncRNA upstream 1600 70368700 ~ 70369545 (+) True G836447
TU951332 lncRNA upstream 49605 70285939 ~ 70321540 (+) True G836412
TU951323 lncRNA upstream 96209 70274673 ~ 70274936 (+) True G836404
TU951302 lncRNA upstream 105934 70240306 ~ 70265211 (+) True G836385
TU951299 lncRNA upstream 135790 70234961 ~ 70235355 (+) True G836382
TU951399 lncRNA downstream 44810 70420893 ~ 70421314 (+) True G836451
TU951400 lncRNA downstream 46530 70422613 ~ 70425804 (+) True G836452
TU951415 lncRNA downstream 85228 70461311 ~ 70508059 (+) True pofut1
TU951428 lncRNA downstream 113041 70489124 ~ 70491536 (+) True G836474
TU951414 lncRNA downstream 132997 70509080 ~ 70509496 (+) True G836465
XM_036988862.1 mRNA upstream 625859 69643342 ~ 69745286 (+) True LOC110531260
XM_036988861.1 mRNA upstream 751890 69464993 ~ 69619255 (+) False LOC110531259
XM_036988860.1 mRNA upstream 751890 69465430 ~ 69619255 (+) False LOC110531259
XM_036988859.1 mRNA upstream 751890 69510091 ~ 69619255 (+) True LOC110531259
XM_021616908.2 mRNA upstream 962945 69384397 ~ 69408200 (+) False LOC110532768
XM_036988876.1 mRNA downstream 15036 70391119 ~ 70416968 (+) False LOC110531266
XR_005053350.1 mRNA downstream 15036 70391119 ~ 70416968 (+) False LOC110531266
XR_005053351.1 mRNA downstream 15036 70391119 ~ 70416968 (+) True LOC110531266
XM_021616935.2 mRNA downstream 125353 70501436 ~ 70508110 (+) False pofut1
XM_036988887.1 mRNA downstream 134040 70510123 ~ 70516707 (+) False kif3b
TU951291 other upstream 161510 70208678 ~ 70209635 (+) True G836374
TU951181 other upstream 337918 70032992 ~ 70033227 (+) True G836274
TU950024 other upstream 1003357 69287276 ~ 69367788 (+) True G835268
TU950033 other upstream 1104671 69261171 ~ 69266474 (+) True LOC110532770
TU950021 other upstream 1126667 69239596 ~ 69244478 (+) False G835266
TU951966 other downstream 378268 70754351 ~ 70759695 (+) False LOC110532786
TU951967 other downstream 378268 70754351 ~ 70759643 (+) True LOC110532786
TU952565 other downstream 856703 71232786 ~ 71233424 (+) True G837369
TU952646 other downstream 1005076 71381159 ~ 71381658 (+) False znf335
TU952642 other downstream 1007816 71383899 ~ 71384463 (+) True znf335

Expression Profile