RNA id: TU951414


Basic Information

Item Value
RNA id TU951414
length 417
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G836465
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70509080 ~ 70509496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttgaattgctgtaaagaaaccactactaaaggactccaataagaagagacttacttgggcggagaaacacgagcaatggacattagaccagtggaaatctgtccttcggtctgatgagtccaaatttgagatttttggttccaaccgccgtgtctttgtgagaagcagagtaggtgaacggatgatctccacatgtgtggttcccaccgtgaagcatggaggaggaggtgtgattctgacactgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgtagcgatacgccatcccatctggtttgcgcttagtgggactatcatttgtttttcaacaggtcaatgacccagcaagatggcgctgacagagatggtcgcctcacttcgagtccttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU951415 lncRNA upstream 1021 70461311 ~ 70508059 (+) True pofut1
TU951428 lncRNA upstream 17544 70489124 ~ 70491536 (+) True G836474
TU951400 lncRNA upstream 83276 70422613 ~ 70425804 (+) True G836452
TU951399 lncRNA upstream 87766 70420893 ~ 70421314 (+) True G836451
TU951375 lncRNA upstream 135236 70373321 ~ 70373844 (+) True G836449
TU951451 lncRNA downstream 9693 70519189 ~ 70520992 (+) False kif3b
TU951443 lncRNA downstream 10159 70519655 ~ 70520992 (+) False kif3b
TU951444 lncRNA downstream 10159 70519655 ~ 70520992 (+) False kif3b
TU951446 lncRNA downstream 10159 70519655 ~ 70520992 (+) False kif3b
TU951450 lncRNA downstream 10159 70519655 ~ 70520992 (+) False kif3b
XM_021616935.2 mRNA upstream 970 70501436 ~ 70508110 (+) False pofut1
XM_036988876.1 mRNA upstream 92112 70391119 ~ 70416968 (+) False LOC110531266
XR_005053350.1 mRNA upstream 92112 70391119 ~ 70416968 (+) False LOC110531266
XR_005053351.1 mRNA upstream 92112 70391119 ~ 70416968 (+) True LOC110531266
XM_021616937.2 mRNA upstream 132997 70371145 ~ 70376083 (+) False LOC110532792
XM_036988887.1 mRNA downstream 627 70510123 ~ 70516707 (+) False kif3b
XM_036988885.1 mRNA downstream 627 70510123 ~ 70521031 (+) False kif3b
XM_036988886.1 mRNA downstream 627 70510123 ~ 70521031 (+) False kif3b
XM_036988894.1 mRNA downstream 218399 70727895 ~ 70749329 (+) False LOC110532787
XM_036988895.1 mRNA downstream 218399 70727895 ~ 70749329 (+) False LOC110532787
TU951291 other upstream 299445 70208678 ~ 70209635 (+) True G836374
TU951181 other upstream 475853 70032992 ~ 70033227 (+) True G836274
TU950024 other upstream 1141292 69287276 ~ 69367788 (+) True G835268
TU950033 other upstream 1242606 69261171 ~ 69266474 (+) True LOC110532770
TU950020 other upstream 1264602 69242214 ~ 69244478 (+) True G835266
TU951966 other downstream 244855 70754351 ~ 70759695 (+) False LOC110532786
TU951967 other downstream 244855 70754351 ~ 70759643 (+) True LOC110532786
TU952565 other downstream 723290 71232786 ~ 71233424 (+) True G837369
TU952646 other downstream 871663 71381159 ~ 71381658 (+) False znf335
TU952642 other downstream 874403 71383899 ~ 71384463 (+) True znf335

Expression Profile