RNA id: TU951450


Basic Information

Item Value
RNA id TU951450
length 1289
lncRNA type sense_over
GC content 0.42
exon number 3
gene id kif3b
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70510123 ~ 70521031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTGCCGCACCTCCTGTCACTGTGAGGGCTGTGCCGCACCTCCTGTCACTGTGAGGGCTGTGCCGCACCTCCTGTCACTGTGAGGGCTGTGCCGCACCTCCTGTCACTGTGAGGGCTGTGCCGCACCTCCTGTCACTGTGAGGGCTGTGCTGCCgcttgctgctgctactactgggTTCTACTACCCCGTGACAtagtatatacaaatatatatatatatagagagcaACATGTCCATAGATAATCCTGCGGCACCTTTTCAGTTGTAGAAATTATACAAGTAAATAGGTCTCAATATTTGGAGAAGTTAACTTATTACCACTTTTCATTTTTATAGACACGTGTAGATTAAAGTTTTATTTTTGGATTTGTATAATTTCAATTTTATGTACACATTGTTTCATTGTTTTATACTTTTTGTTTTAATCTGACACGTTTAATAAATGGCTCTAGTTCAAATCTTTAGGTTAACTTTAAAATGTAAATTAAGGTTGGCTCAACTGCAATGTTTTATATGCTCTCAGATTGTGTGTGTGAAAGAATATGTTGGGACATGTGTACACAGAGTATAGCAAATATTAGGAAGACTTCTCGGGTTGCAGCCATCCCCccctttccctcagaacagcctcaattcgtcggggcatgaactctgaggtgttgaaagcgttccacagggatgctggcccatgttgactccaatgcttcccacagttgtgtcaagttgcctggatgtcctttgggtggtggaccattcttgatacacatgagaaacttgtgaaacccagcagcgttgcagttcttgatacaaagCGGTGTGCCTGACACATACCatataccctgttcaaaggcacttgtctttcccattcacacaccatccatgtctcctccccttcatctacactgattgaagtggatttaacaacatAGCGTTCAGctggtcagtctcatggaaagacgtgttcctaatggttttgtacactgtgtacatTTGCCATGAGTCTTTATACAATGGTTAGCCCCTGATTTAAATTACTTCTCTGATCTTATGAAAGCTAAACAATTACACTACATATTGCATGATTTTAGAAAATTGTCACCAAGCCCTAGAATTTGGTAAATGTGAATGTTCAATTTGCTTGATAATCCCTAAATTTTTACCGCACCACACCAAGACTCCATGTATCTGTGTAGAAGACGTTTGACCGAGATCAATCTCTGATATTGTTTTAGCCAAGTTAAGAGTGTGCTGGTGCTGTCTGGGAAATGCAGAAGTCCTCTTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU951414 lncRNA upstream 10159 70509080 ~ 70509496 (+) True G836465
TU951415 lncRNA upstream 11596 70461311 ~ 70508059 (+) True pofut1
TU951428 lncRNA upstream 28119 70489124 ~ 70491536 (+) True G836474
TU951400 lncRNA upstream 93851 70422613 ~ 70425804 (+) True G836452
TU951399 lncRNA upstream 98341 70420893 ~ 70421314 (+) True G836451
TU951458 lncRNA downstream 159 70521151 ~ 70524129 (+) True G836487
TU951479 lncRNA downstream 7083 70528075 ~ 70529519 (+) True G836507
TU951539 lncRNA downstream 86567 70607559 ~ 70607877 (+) True G836547
TU951542 lncRNA downstream 88810 70609802 ~ 70610039 (+) True G836550
TU951890 lncRNA downstream 111885 70632877 ~ 70633157 (+) True G836826
XM_036988887.1 mRNA upstream 2948 70510123 ~ 70516707 (+) False kif3b
XM_021616935.2 mRNA upstream 11545 70501436 ~ 70508110 (+) False pofut1
XM_036988876.1 mRNA upstream 102687 70391119 ~ 70416968 (+) False LOC110531266
XM_036988894.1 mRNA downstream 206903 70727895 ~ 70749329 (+) False LOC110532787
XM_036988895.1 mRNA downstream 206903 70727895 ~ 70749329 (+) False LOC110532787
XM_036988896.1 mRNA downstream 229846 70750838 ~ 70754151 (+) True LOC118966110
XM_021616931.2 mRNA downstream 233303 70754295 ~ 70759693 (+) False LOC110532786
XM_021616930.2 mRNA downstream 238995 70759987 ~ 70775436 (+) False LOC110532785
TU951291 other upstream 310020 70208678 ~ 70209635 (+) True G836374
TU951181 other upstream 486428 70032992 ~ 70033227 (+) True G836274
TU950024 other upstream 1151867 69287276 ~ 69367788 (+) True G835268
TU950033 other upstream 1253181 69261171 ~ 69266474 (+) True LOC110532770
TU950020 other upstream 1275177 69242214 ~ 69244478 (+) True G835266
TU951966 other downstream 233359 70754351 ~ 70759695 (+) False LOC110532786
TU951967 other downstream 233359 70754351 ~ 70759643 (+) True LOC110532786
TU952565 other downstream 711794 71232786 ~ 71233424 (+) True G837369
TU952646 other downstream 860167 71381159 ~ 71381658 (+) False znf335
TU952642 other downstream 862907 71383899 ~ 71384463 (+) True znf335

Expression Profile