RNA id: TCONS_00037021


Basic Information

Item Value
RNA id TCONS_00037021
length 212
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id XLOC_018520
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54270891 ~ 54271455 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAGACGGACGCGCGCAGATGCTCCGAGTGCGCGTTTGCAGAAGAGCTGTGGATGCGGAGGaaacttgagtgtgtgtgtgtgtggcgctgAAGataccacacacaaacacacttcgaCTGCTGATAATGCCGCTGATTAAGAGCGGTGACGGATGAGAAGCAGTGCGCGCGCTCGTCACACACCGCAGGACTGAAAATGTGGACTATAGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037020 lncRNA downstream 34459 54219268 ~ 54236432 (-) False XLOC_018518
TCONS_00036528 lncRNA downstream 34459 54228676 ~ 54236432 (-) True XLOC_018518
TCONS_00036527 lncRNA downstream 37737 54228547 ~ 54233154 (-) False XLOC_018518
TCONS_00036526 lncRNA downstream 38121 54228179 ~ 54232770 (-) False XLOC_018518
TCONS_00036525 lncRNA downstream 38457 54220049 ~ 54232434 (-) False XLOC_018518
TCONS_00037024 lncRNA upstream 68257 54339711 ~ 54345412 (-) True XLOC_018521
TCONS_00036529 lncRNA upstream 212311 54483765 ~ 54488224 (-) True XLOC_018525
TCONS_00037025 lncRNA upstream 315185 54586639 ~ 54591398 (-) False XLOC_018529
TCONS_00036530 lncRNA upstream 318657 54590111 ~ 54610803 (-) True XLOC_018529
TCONS_00037026 lncRNA upstream 491067 54762521 ~ 54772668 (-) True XLOC_018530
TCONS_00036347 mRNA downstream 11111 54249339 ~ 54259780 (-) True XLOC_018519
TCONS_00036346 mRNA downstream 25635 54213688 ~ 54245256 (-) False XLOC_018518
TCONS_00036345 mRNA downstream 62547 54201459 ~ 54208344 (-) True XLOC_018517
TCONS_00036344 mRNA downstream 72761 54196543 ~ 54198130 (-) True XLOC_018516
TCONS_00036343 mRNA downstream 78761 54174978 ~ 54192130 (-) True XLOC_018515
TCONS_00036348 mRNA upstream 88814 54360268 ~ 54381034 (-) False XLOC_018522
TCONS_00036349 mRNA upstream 89530 54360984 ~ 54377933 (-) True XLOC_018522
TCONS_00036350 mRNA upstream 148138 54419592 ~ 54435287 (-) True XLOC_018523
TCONS_00036352 mRNA upstream 165599 54437053 ~ 54462551 (-) False XLOC_018524
TCONS_00036351 mRNA upstream 165599 54437053 ~ 54462551 (-) True XLOC_018524
TCONS_00036341 other downstream 236348 54013424 ~ 54034543 (-) True XLOC_018509
TCONS_00036338 other downstream 258848 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036326 other downstream 835415 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 835498 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1443765 52827010 ~ 52827126 (-) True XLOC_018493

Expression Profile

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