RNA id: TCONS_00037026


Basic Information

Item Value
RNA id TCONS_00037026
length 456
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id XLOC_018530
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54762521 ~ 54772668 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgagagtgtatgtgtgtgtgtgtgtgtgtatgtgtgttgatgTGAGGAGAATCACAGTGATCTGGCTCTTAGCTCTCCGGCTAGCAGCTAGCGCTGTGTCCCGCGGAAGGTCTGCTGTTCTCCGTCATGCTGCCGATGGAGATATggatataaatatggatatggaTGGAGCGGTGTCCTCATCTGCTTGTCCTGAACAGGTTCTCCGTCATGCATGTTCTGTGCGCATCAGGATTCCTGGACGACACACTCTCAGCTAAAAATAGTGTAGCACAGTGCAGAGTGAAGCTGAAGCTGTTTCTATTACTGCTGTTTCTAATTGAGGCTCGGCCGCTGCTGGGAGATGCGCATGCGGACGCAATTTACACTCCAATTACACTGACGACCTCTGTGCTATAACTCTGAACGCTATTATCACACATGTGTGATGACGAGGGAGATGTGTCcagatgcg

Function

GO:

id name namespace
GO:0004629 phospholipase C activity molecular_function
GO:0042578 phosphoric ester hydrolase activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036530 lncRNA downstream 151718 54590111 ~ 54610803 (-) True XLOC_018529
TCONS_00037025 lncRNA downstream 171123 54586639 ~ 54591398 (-) False XLOC_018529
TCONS_00036529 lncRNA downstream 274297 54483765 ~ 54488224 (-) True XLOC_018525
TCONS_00037024 lncRNA downstream 417109 54339711 ~ 54345412 (-) True XLOC_018521
TCONS_00037022 lncRNA downstream 491066 54270891 ~ 54271455 (-) False XLOC_018520
TCONS_00037027 lncRNA upstream 115789 54888457 ~ 54890490 (-) False XLOC_018533
TCONS_00037028 lncRNA upstream 115789 54888457 ~ 54891115 (-) True XLOC_018533
TCONS_00036358 lncRNA upstream 220689 54993357 ~ 54998597 (-) True XLOC_018534
TCONS_00036531 lncRNA upstream 274848 55047516 ~ 55049037 (-) True XLOC_018535
TCONS_00036359 lncRNA upstream 396332 55169000 ~ 55169889 (-) True XLOC_018536
TCONS_00036355 mRNA downstream 198503 54525404 ~ 54564018 (-) True XLOC_018528
TCONS_00036354 mRNA downstream 239861 54512067 ~ 54522660 (-) True XLOC_018527
TCONS_00036353 mRNA downstream 253871 54506428 ~ 54508650 (-) True XLOC_018526
TCONS_00036352 mRNA downstream 299970 54437053 ~ 54462551 (-) False XLOC_018524
TCONS_00036356 mRNA upstream 56430 54829098 ~ 54869006 (-) True XLOC_018531
TCONS_00036357 mRNA upstream 101453 54874121 ~ 54924593 (-) True XLOC_018532
TCONS_00036341 other downstream 727978 54013424 ~ 54034543 (-) True XLOC_018509
TCONS_00036338 other downstream 750478 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036326 other downstream 1327045 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 1327128 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1935395 52827010 ~ 52827126 (-) True XLOC_018493

Expression Profile

//