Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00037546 |
| length | 1191 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 2 |
| gene id | XLOC_018889 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007132.7 |
| NCBI id | CM002905.2 |
| chromosome length | 45934066 |
| location | 21817975 ~ 21819321 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0009313 | oligosaccharide catabolic process | biological_process |
| GO:0006689 | ganglioside catabolic process | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004308 | exo-alpha-sialidase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-071220-2 | Predicted to enable exo-alpha-sialidase activity. Predicted to be involved in ganglioside catabolic process and oligosaccharide catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in cytoplasm; intracellular membrane-bounded organelle; and membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human NEU3 (neuraminidase 3). |
| ensembl_id | ENSDART00000151292 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00037536 | lncRNA | upstream | 63545 | 21750635 ~ 21754430 (+) | True | XLOC_018883 |
| TCONS_00037535 | lncRNA | upstream | 73183 | 21743699 ~ 21744792 (+) | False | XLOC_018883 |
| TCONS_00039400 | lncRNA | upstream | 165824 | 21649760 ~ 21652151 (+) | True | XLOC_018864 |
| TCONS_00037504 | lncRNA | upstream | 470595 | 21339320 ~ 21347380 (+) | False | XLOC_018859 |
| TCONS_00039401 | lncRNA | downstream | 279055 | 22098376 ~ 22103173 (+) | True | XLOC_018893 |
| TCONS_00039168 | lncRNA | downstream | 406045 | 22225366 ~ 22225898 (+) | True | XLOC_018896 |
| TCONS_00037560 | lncRNA | downstream | 550548 | 22369869 ~ 22372212 (+) | False | XLOC_018899 |
| TCONS_00037561 | lncRNA | downstream | 550564 | 22369885 ~ 22371627 (+) | True | XLOC_018899 |
| TCONS_00037568 | lncRNA | downstream | 816083 | 22635404 ~ 22637409 (+) | False | XLOC_018904 |
| TCONS_00037544 | mRNA | upstream | 4199 | 21811867 ~ 21813776 (+) | False | XLOC_018888 |
| TCONS_00037545 | mRNA | upstream | 4336 | 21812311 ~ 21813639 (+) | True | XLOC_018888 |
| TCONS_00037543 | mRNA | upstream | 8868 | 21803596 ~ 21809107 (+) | False | XLOC_018887 |
| TCONS_00037542 | mRNA | upstream | 8868 | 21803596 ~ 21809107 (+) | True | XLOC_018887 |
| TCONS_00037541 | mRNA | upstream | 9516 | 21803363 ~ 21808459 (+) | False | XLOC_018887 |
| TCONS_00037549 | mRNA | downstream | 87350 | 21906671 ~ 22082510 (+) | True | XLOC_018890 |
| TCONS_00037552 | mRNA | downstream | 305415 | 22124736 ~ 22142972 (+) | False | XLOC_018894 |
| TCONS_00037553 | mRNA | downstream | 305428 | 22124749 ~ 22142967 (+) | True | XLOC_018894 |
| TCONS_00037554 | mRNA | downstream | 339423 | 22158744 ~ 22214734 (+) | True | XLOC_018895 |
| TCONS_00037555 | mRNA | downstream | 418643 | 22237964 ~ 22309466 (+) | False | XLOC_018897 |
| TCONS_00037537 | other | upstream | 55879 | 21761978 ~ 21762096 (+) | True | XLOC_018884 |
| TCONS_00037531 | other | upstream | 80648 | 21736733 ~ 21737327 (+) | True | XLOC_018880 |
| TCONS_00037528 | other | upstream | 88707 | 21727264 ~ 21729268 (+) | False | XLOC_018878 |
| TCONS_00037529 | other | upstream | 89565 | 21727474 ~ 21728410 (+) | True | XLOC_018878 |
| TCONS_00037523 | other | upstream | 117416 | 21700241 ~ 21700559 (+) | True | XLOC_018873 |
| TCONS_00037548 | other | downstream | 74746 | 21894067 ~ 21909794 (+) | False | XLOC_018890 |
| TCONS_00037550 | other | downstream | 100756 | 21920077 ~ 21920209 (+) | True | XLOC_018891 |
| TCONS_00037551 | other | downstream | 216740 | 22036061 ~ 22036177 (+) | True | XLOC_018892 |
| TCONS_00037569 | other | downstream | 816093 | 22635414 ~ 22637409 (+) | False | XLOC_018904 |
| TCONS_00037570 | other | downstream | 817566 | 22636887 ~ 22662564 (+) | True | XLOC_018904 |
