RNA id: TCONS_00037554


Basic Information

Item Value
RNA id TCONS_00037554
length 1943
RNA type mRNA
GC content 0.52
exon number 12
gene id XLOC_018895
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22158744 ~ 22214734 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgcagGCTGAAAGATGTTCTCCTCTGCGAAGGCCTTTGAGGGGCAGCATTACTCCACCCTCAAGAGGCAGTGTCTACAGAGTGGAGCGTTGTTTGAGGACCCGCTGTTCCCCGCTGTGGATGATTCGCTCTTCTACCAGGGGAACCGGATTGGTCGTGTCCACTGGAAAAGACCTGAGGAGCTGTGTGACGATCCTCATTTGTTTGTGGACGGGATCAGTGCCCATGACTTGCACCAAGGGCAGCTGGGAAACTGTTGGTTTGTGGCGGCCTGCTCCAGTCTGGCCTCCCGAGAGTCACTCTGGCAGAAAGTTATCCCAGACTGGAAGGAGCAGGAATGGGACCCGGAGAAGGCTGATTCTTATGCAGGAATCTTTCACTTCCGCTTCTGGCGGTTTGGCGAATGGGTAGACGTAGTGATCGATGACCGTCTGCCCACGGTGGACAACCAGCTGGTTTACTGCCATTCCAATGACAGCAATGAGTTCTGGAGCGCCCTTGTGGAAAAAGCCTATGCCAAAGTCTATGGCTGTTATGAAGCACTGGATGGTGGGAACACGGCTGATGCTCTGGTGGATTTCACTGGTGGTGTGTCTGAACCGATGGACCTGCTGGAGGGTCAGTTCGCTCAGGATGAAACTGCCAGAAACCAGCTCTTCGAGAGGGTGCTTAAGGTTCATAATCGAGATGGCCTCATCAGCTGCTCCATCAGGGCAACCACAGTAGAGGACATGGAAGCACGACTGGACTGTGGATTAGTGAAAGGCCATGCTTACGCAGTGACCGACGTACGCAAGGTCCGTCTGGGACATGGCCTACTGGCTTATTTTAAGTCTGAAAAGCTGCACATGATCCGCATGAGGAACCCCTGGGGTGAGAAGGAGTGGAGTGGACCATGGAGTGACAGCTCAGAAGAGTGGAAGAAAGTGAgcaagagtgagagagagaagctGGGCGTCACTGTTCAGGATGATGGAGAGTTTTGGATGAACTTTGAGGATTTCTGTCACTACTTCACGGACCTGATCCTGTGTCGACTCATCAACACGTCCTACTTAAGCATACATAAGACCTGGGAAGAGGAGGTGATGAGGGGCTTGTGGCTTCACCGAGATGAACCGCTCCGCAACCGTGCCGGAGGCTGCATTAACCACAAAACCACATTTCTGCAAAACCCACAGTATGTTTTTGATGTGAGAAAAGTGGAAGATGAGGTGCTGATCTGCCTGCAGCAAAAGGAACGCAGAGCTACTCCAAAGGAGGGCAAAGGAGAGAATCTGGCCATTGGATTTGATATCCATAGGGTGGAGTTGAACAGAAAGTACAGAATGCACTCGGCGCAGCAGAAGGTCGCAGGGTCCATCTACATCAACTCTCGCTGCGTTTTCCTCCGGAAAGAGCTAAAGGAGGGCCGTTACGTCATCATCCCCACAACATTTGACCCCGGTCAGCAAGGAGAGTTCCTGCTCAGAGTCTTCACTGATGTGCCTTCAGACTgcaaAGAATTAACTCTGGACGAGCCTCCACAGACATGCTGGACTGGGATGTGTGGATACCCTCAGCTGGTCACACAGGTGCATGTGTTAAGTGCCGAGGGCCTGCAGGGCCAAGACGCTAATGGAGCCTCTGACCCGTATGTGATCATCACCTGTGAGGGGGAGAAGGTCCGCTCTCCTGTGCACAAGGACACGCGCTGCcctaattttgacatcaagggAATATTCTACCGCAAAAAGCCAAAGGAAGGCATTCACATCGAGATCTACAATAAGAATGTGATTGTTGACACCTTCCTGGGTCAGGTGACCCTCTTTAGTGACCCAAATGATCGCCAAGAGCAGCACACGGTCTACCTTAAAGACAAGGGCAGTCGGCAGGACAACAACCTTCCAGGGACGCTGACTGTGCGTGTGATCACCTGCACCACTTTAACCAACATCTGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-29 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm. Is expressed in nervous system. Human ortholog(s) of this gene implicated in neovascular inflammatory vitreoretinopathy. Orthologous to human CAPN5 (calpain 5).

Ensembl:

ensembl_id ENSDART00000101732

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039401 lncRNA upstream 55571 22098376 ~ 22103173 (+) True XLOC_018893
TCONS_00037536 lncRNA upstream 404314 21750635 ~ 21754430 (+) True XLOC_018883
TCONS_00037535 lncRNA upstream 413952 21743699 ~ 21744792 (+) False XLOC_018883
TCONS_00039400 lncRNA upstream 506593 21649760 ~ 21652151 (+) True XLOC_018864
TCONS_00039399 lncRNA upstream 811364 21344359 ~ 21347380 (+) False XLOC_018859
TCONS_00039168 lncRNA downstream 10632 22225366 ~ 22225898 (+) True XLOC_018896
TCONS_00037560 lncRNA downstream 155135 22369869 ~ 22372212 (+) False XLOC_018899
TCONS_00037561 lncRNA downstream 155151 22369885 ~ 22371627 (+) True XLOC_018899
TCONS_00037568 lncRNA downstream 420670 22635404 ~ 22637409 (+) False XLOC_018904
TCONS_00039402 lncRNA downstream 505480 22720214 ~ 22733107 (+) True XLOC_018906
TCONS_00037552 mRNA upstream 15772 22124736 ~ 22142972 (+) False XLOC_018894
TCONS_00037553 mRNA upstream 15777 22124749 ~ 22142967 (+) True XLOC_018894
TCONS_00037549 mRNA upstream 76234 21906671 ~ 22082510 (+) True XLOC_018890
TCONS_00037547 mRNA upstream 339423 21817975 ~ 21819321 (+) False XLOC_018889
TCONS_00037546 mRNA upstream 339423 21817975 ~ 21819321 (+) True XLOC_018889
TCONS_00037555 mRNA downstream 23230 22237964 ~ 22309466 (+) False XLOC_018897
TCONS_00037556 mRNA downstream 23976 22238710 ~ 22309466 (+) True XLOC_018897
TCONS_00037557 mRNA downstream 115271 22330005 ~ 22336218 (+) False XLOC_018898
TCONS_00037558 mRNA downstream 115271 22330005 ~ 22346723 (+) False XLOC_018898
TCONS_00037559 mRNA downstream 115360 22330094 ~ 22346554 (+) True XLOC_018898
TCONS_00037551 other upstream 122567 22036061 ~ 22036177 (+) True XLOC_018892
TCONS_00037550 other upstream 238535 21920077 ~ 21920209 (+) True XLOC_018891
TCONS_00037548 other upstream 248950 21894067 ~ 21909794 (+) False XLOC_018890
TCONS_00037537 other upstream 396648 21761978 ~ 21762096 (+) True XLOC_018884
TCONS_00037531 other upstream 421417 21736733 ~ 21737327 (+) True XLOC_018880
TCONS_00037569 other downstream 420680 22635414 ~ 22637409 (+) False XLOC_018904
TCONS_00037570 other downstream 422153 22636887 ~ 22662564 (+) True XLOC_018904
TCONS_00037591 other downstream 1469986 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037595 other downstream 2021417 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037602 other downstream 2332790 24547524 ~ 24547600 (+) True XLOC_018926

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_06382586_06409914.mRNA True 3384 mRNA 0.48 16 CI01000006 6381824 ~ 6409914 (-)