RNA id: TCONS_00037558


Basic Information

Item Value
RNA id TCONS_00037558
length 1842
RNA type mRNA
GC content 0.48
exon number 13
gene id XLOC_018898
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22330005 ~ 22346723 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGATGGCGGCGTGTATGAGTGCTGGATCTGATGTTTTTATTAGCCTGAAGTTTGTCATTTGAAGTGCTGTATTAAGCAAGCTGTGCACGTCAGTCTTTAATATATCGTGTATGAGACTCGGGCTCCGGTCGTTCAAATGTCCGAGGGCAGATAGATAGACGGGAATGTGATAGCTCACTGCGCTCAGACAGGTTGAGTTGTGTTGGTGGCCAGTTTGACGCTAAAATTGACAGCTTTAATCAGCTAGCAGTTCACATACTCCGAGAGGACATCGTGCACGAAACTCAGCAAATGTGACCTTCTGTCTGGCCAATAACATCCTACTAGTCAGATCCATCACGTTCATATCTGCTCTGGTCATATGTTTAGAAATATAATGCTCTCCCGAGCTGTAAGGAAATCTCTCTCCTATGGAAATGCAGTATTGGCGGGTTTCTCTGGCAGCTATTATTGCAGTCGTGTGTGTTTTCATCAGACCGCCGTGTGTAAAGTTGCTTCGCAAGCTGAATGTGCCTTCAGACCTGCGAAAGTGGCTGTTGTGACTAAAACCACACGATATGAGTTCGAGCAGCAGAGATATCGCTATGCGGGACTGTCGGAGGAGGACCTCAAACAGCTGCTTGCTCTAAAAGGATCGAGTTACAGTGGGCTTCTGGAGAGGCACAATATACACACCTTCAATGTTGGACATATTGTGGAAAGTCTACAAAAACAGGGGATTGAGGTGCGTGTTGTAAAAAGAGGAGAGTATGATGAGGAGACGGTACGATGGGCCGATGCCATCATCTCTGCTGGAGGTGATGGCACCATGCTGCTAGTTGCTAGTAAAGTGTATGATAAGAGCAAACCTGTATTGGGTGTCAATACAGACCcagagagGTCGGAGGGTCACCTGTGTTTGCCCGTCCGCTACACACACGCCTTTTCTGAGGCCTTGCAGAAACTCAGGAAGGGAGATTTCAGGTGGCAGTGGCGTCAGCGTATCCGCATGCATCTGGAGGGCACCGGCATCAATCCCACTCCAGTGGACCTTCATGAACTGCAGCTGAGTCTTCAACAGCACAGCAAAGCCCACCGAATCAGCACAGGCACCCAGAGCAGCACTCCCCACGACAGTCCCGAAGCGCCTCATTTACTGCCAGTCCGTGGGCTCAATGAGATCTTCATTGGCGAGTCTCTGTCCTCCAGGGCTTCATACTATGAAATCTCCATTGATGACGGGCCGTGGGAAAAACAGAAGAGCTCAGGCCTCAGCATTTGCACTGGAACTGGATCCAAAGCCTGGTCTTACAATATTAATAAGCTGGTGGAGCAGGCAGTGGAGGATGTACTCAGAATAGctaAAACAAAGACTGGTTTGGAGGTGCCTCTAAACCGGGAGTTCGTTGAGAGTGtaacAGACACGTACAATGAGTCTCTAATCTTCAGCCCAGAGGAAGACAAACTGTTCTTCAGTGTGAGAGAGCCCATAGTCAACAGAGTATTCTCCAACAGCCGACAAAGAGGCTTTGCCaaaaaAGTTTGCGTTCGCTCGAGATGCTGGGATGCCTGCATGGTAGTAGACGGTGGAACGTCCTTCGAGTTTAACGACGGTGCCATTGCTACAATCAGCTTAAACGAGGAGGACCTGCTGCGAACTGTCATTCTTGATTAAATCCTGTGATTCATCAAACTGTTGCTTGACAAGCTTGAATATATTTATTGAGGAACGAACTGTCATCAAAGCCAGACTTTGAGATGAACAGCGAGGTTTGAGTATGAAGTGTACATAAAATCACACTTCCATAGTCTATGATTACAGCTTTCAGGAATAAACACATCTTTCCTAGATACACCACCAT

Function

GO:

id name namespace
GO:0006741 NADP biosynthetic process biological_process
GO:0019674 NAD metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003951 NAD+ kinase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-202 Predicted to enable NAD+ kinase activity. Predicted to be involved in NAD metabolic process. Predicted to act upstream of or within NADP biosynthetic process and phosphorylation. Predicted to be active in mitochondrion. Orthologous to human NADK2 (NAD kinase 2, mitochondrial).

Ensembl:

ensembl_id ENSDART00000157839

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039168 lncRNA upstream 104107 22225366 ~ 22225898 (+) True XLOC_018896
TCONS_00039401 lncRNA upstream 226832 22098376 ~ 22103173 (+) True XLOC_018893
TCONS_00037536 lncRNA upstream 575575 21750635 ~ 21754430 (+) True XLOC_018883
TCONS_00037535 lncRNA upstream 585213 21743699 ~ 21744792 (+) False XLOC_018883
TCONS_00039400 lncRNA upstream 677854 21649760 ~ 21652151 (+) True XLOC_018864
TCONS_00037560 lncRNA downstream 23146 22369869 ~ 22372212 (+) False XLOC_018899
TCONS_00037561 lncRNA downstream 23162 22369885 ~ 22371627 (+) True XLOC_018899
TCONS_00037568 lncRNA downstream 288681 22635404 ~ 22637409 (+) False XLOC_018904
TCONS_00039402 lncRNA downstream 373491 22720214 ~ 22733107 (+) True XLOC_018906
TCONS_00037574 lncRNA downstream 430357 22777080 ~ 22783232 (+) True XLOC_018907
TCONS_00037555 mRNA upstream 20539 22237964 ~ 22309466 (+) False XLOC_018897
TCONS_00037556 mRNA upstream 20539 22238710 ~ 22309466 (+) True XLOC_018897
TCONS_00037554 mRNA upstream 115271 22158744 ~ 22214734 (+) True XLOC_018895
TCONS_00037552 mRNA upstream 187033 22124736 ~ 22142972 (+) False XLOC_018894
TCONS_00037562 mRNA downstream 54228 22400951 ~ 22422876 (+) False XLOC_018900
TCONS_00037563 mRNA downstream 57939 22404662 ~ 22422939 (+) True XLOC_018900
TCONS_00037564 mRNA downstream 76563 22423286 ~ 22428328 (+) True XLOC_018901
TCONS_00037565 mRNA downstream 211464 22558187 ~ 22565170 (+) True XLOC_018902
TCONS_00037566 mRNA downstream 283574 22630297 ~ 22634159 (+) False XLOC_018903
TCONS_00037551 other upstream 293828 22036061 ~ 22036177 (+) True XLOC_018892
TCONS_00037550 other upstream 409796 21920077 ~ 21920209 (+) True XLOC_018891
TCONS_00037548 other upstream 420211 21894067 ~ 21909794 (+) False XLOC_018890
TCONS_00037537 other upstream 567909 21761978 ~ 21762096 (+) True XLOC_018884
TCONS_00037531 other upstream 592678 21736733 ~ 21737327 (+) True XLOC_018880
TCONS_00037569 other downstream 288691 22635414 ~ 22637409 (+) False XLOC_018904
TCONS_00037570 other downstream 290164 22636887 ~ 22662564 (+) True XLOC_018904
TCONS_00037591 other downstream 1337997 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037595 other downstream 1889428 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037602 other downstream 2200801 24547524 ~ 24547600 (+) True XLOC_018926

Expression Profile

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