RNA id: TCONS_00037564


Basic Information

Item Value
RNA id TCONS_00037564
length 1112
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_018901
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22423286 ~ 22428328 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAACAGTGGACGCTAAAACAGGGAAAAAACAGCCTTACGGAAATACAAGGTTTCGGGAAATTAATCTTCGCTTTCTTTCACTTCTCTATCTTTAGATCAGATAGGTGGAGGATGGCAGGTACATCGCGACATAATCGAGAGATGATGATCAATGCCAAAAAGCAGCTGGCTGAGTGTTCAGACCCCATTGAGCGTCTGCGGCTGCAGTGTTTGTCCCGAGGATGTGCGGGCATCAAGGGACTGGGCAGGACTTTCCGGATCATGGATGATGACAACAATCGCACGCTGGATTTAAAAGAGTTCATAAAAGGTCTAAATGACTATGGTGTGCTCATGGAGAAAGAAGAGGCTATCAATCTTTTTCAGCAGTTTGACAGAGACGGCAGTGGACAAATTGACTTCGATGAGTTTCTTATTACTCTGAGGCCACCCATGTCTAATGCCAGAAAGGAGGTGGTGTTACAGGCATTTAAAAAGCTGGATAAAACCGGAGACGGTGTGATTACTGTTGAGGATCTGAAAGGAGTGTATGATGTCAGAAAACACCCCAAATATCTAAATGGTGAGTGGACCGAAGACCAAATATTCCGCAAGTTCCTGGACAGTTTTGATTCTCCGGATGACAAGGATGGAAAGGTCACAAAAGAGGAGTTTATGAACTACTACTCCGGCGTCAGCGCATCCATTGACACAGATATCTACTTTATATTAATGATGAGGAATGCATGGAGGCTTAATTAAGCTTAACTATTTTAGGGTGACAAAGGATGAATTCTGGAATTATTACAGTGGAGTCAGTGCTTCTATTGACAAtgatgtgtattttattttaatgatgaaGACTGCATGGAGATTATGAGGCAATCGAATCAAAAATCAAAGCTGCGATATTCCTGACAACTGATATTTGGTGCAAATCAAAAATCAAAGCTGCAATATTCCTAAAAGTGAAATGATAAATAGTACTAGCTTTGTAGTAGTTTGAATTATGTTTATAGCCTTGTTAGTGGTTACATAATTTGTTTAGGGtgtttaaaggtgctgttaaATCTTGTTGTTTTACAAAAGAATgactaatttaataaatgttttataatggtTATAAAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-298 Predicted to enable calcium ion binding activity. Is expressed in several structures, including Kupffer's vesicle; alar plate midbrain region; neurogenic placode; peripheral olfactory organ; and pronephric duct. Orthologous to human CAPSL (calcyphosine like).

Ensembl:

ensembl_id ENSDART00000133190

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037560 lncRNA upstream 51074 22369869 ~ 22372212 (+) False XLOC_018899
TCONS_00037561 lncRNA upstream 51659 22369885 ~ 22371627 (+) True XLOC_018899
TCONS_00039168 lncRNA upstream 197388 22225366 ~ 22225898 (+) True XLOC_018896
TCONS_00039401 lncRNA upstream 320113 22098376 ~ 22103173 (+) True XLOC_018893
TCONS_00037536 lncRNA upstream 668856 21750635 ~ 21754430 (+) True XLOC_018883
TCONS_00037568 lncRNA downstream 207076 22635404 ~ 22637409 (+) False XLOC_018904
TCONS_00039402 lncRNA downstream 291886 22720214 ~ 22733107 (+) True XLOC_018906
TCONS_00037574 lncRNA downstream 348752 22777080 ~ 22783232 (+) True XLOC_018907
TCONS_00037583 lncRNA downstream 456617 22884945 ~ 22885892 (+) True XLOC_018911
TCONS_00039403 lncRNA downstream 620209 23048537 ~ 23051547 (+) False XLOC_018914
TCONS_00037563 mRNA upstream 347 22404662 ~ 22422939 (+) True XLOC_018900
TCONS_00037562 mRNA upstream 410 22400951 ~ 22422876 (+) False XLOC_018900
TCONS_00037558 mRNA upstream 76563 22330005 ~ 22346723 (+) False XLOC_018898
TCONS_00037559 mRNA upstream 76732 22330094 ~ 22346554 (+) True XLOC_018898
TCONS_00037557 mRNA upstream 87068 22330005 ~ 22336218 (+) False XLOC_018898
TCONS_00037565 mRNA downstream 129859 22558187 ~ 22565170 (+) True XLOC_018902
TCONS_00037566 mRNA downstream 201969 22630297 ~ 22634159 (+) False XLOC_018903
TCONS_00037567 mRNA downstream 202299 22630627 ~ 22634926 (+) True XLOC_018903
TCONS_00037571 mRNA downstream 268731 22697059 ~ 22705347 (+) True XLOC_018905
TCONS_00037572 mRNA downstream 310611 22738939 ~ 22796064 (+) False XLOC_018907
TCONS_00037551 other upstream 387109 22036061 ~ 22036177 (+) True XLOC_018892
TCONS_00037550 other upstream 503077 21920077 ~ 21920209 (+) True XLOC_018891
TCONS_00037548 other upstream 513492 21894067 ~ 21909794 (+) False XLOC_018890
TCONS_00037537 other upstream 661190 21761978 ~ 21762096 (+) True XLOC_018884
TCONS_00037531 other upstream 685959 21736733 ~ 21737327 (+) True XLOC_018880
TCONS_00037569 other downstream 207086 22635414 ~ 22637409 (+) False XLOC_018904
TCONS_00037570 other downstream 208559 22636887 ~ 22662564 (+) True XLOC_018904
TCONS_00037591 other downstream 1256392 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037595 other downstream 1807823 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037602 other downstream 2119196 24547524 ~ 24547600 (+) True XLOC_018926

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_06272106_06273111.mRNA True 681 mRNA 0.46 4 CI01000006 6272071 ~ 6273111 (-)