RNA id: TCONS_00037583


Basic Information

Item Value
RNA id TCONS_00037583
length 747
lncRNA type retained_intron
GC content 0.41
exon number 3
gene id XLOC_018911
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22878834 ~ 22888375 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCATTTGGTGGTCCAGCCCAGCAGTTTTCCATGCAGCAAAATGTCTCGCAAACCTCCAACTTCAGTGTGCCAGTTCCTACATCATCAGATTTTCAGGGTTCATTTAGACCTCCATTCCCTGGTCCGGGTGTCGGAGGTGTTCCTCAGCCTGTAAGTACTGCCTCACTTATAAAAGTTGCAGAGtgttttgtattgttgttttctaaaacagacatttaaaattatatttcagATGATGGGTGCTCAAAACTTCATGCCCCAAAATCCAATGCCTTTTCAGCCAGGTAATAAATATCCTCTAAATCTGTTATCTGGTGATAACCTGAAAATCAATTATACACTACTGTTTGCTTCTTTGCTTTTGATTGTGAAATCTACTTTAGACCCTTAATGTATTAAGTGAATTGTTTGTTGTTTCAGTCTCCCAATTTCCACAGCCTGAGCCAGAGCCATTGAGACAAATAGATGTGAATGATCTGATGTCTAAGCTTATATCCACTGGAATTATTAAACCTGCACCTACAGACTCAACAGCTGACTCCCCATCAGCTAGTCAGACTATATCTGTGcctgaagaagaggaggaggaggaggagcaagAGCAAGAAGAAGATGACAGTGTCCCAGATTTGACTGGCTTTATTTTGGATGACATGAAACAGAGACACGAAAGCATTATCACTAAACTCTATACTGGAATCCAGTGCTATTCCTGTGGCATGCGTTTTACTGCATCTCAGACAGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006369 termination of RNA polymerase II transcription biological_process
GO:0006378 mRNA polyadenylation biological_process
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000993 RNA polymerase II complex binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03021 Transcription machinery
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-041114-175 Predicted to enable RNA polymerase II complex binding activity and mRNA binding activity. Acts upstream of or within regulation of DNA-templated transcription, termination. Predicted to be part of mRNA cleavage factor complex. Predicted to be active in cytoplasm. Orthologous to human PCF11 (PCF11 cleavage and polyadenylation factor subunit).

Ensembl:

ensembl_id ENSDART00000150154

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037574 lncRNA upstream 101713 22777080 ~ 22783232 (+) True XLOC_018907
TCONS_00039402 lncRNA upstream 151838 22720214 ~ 22733107 (+) True XLOC_018906
TCONS_00037568 lncRNA upstream 247536 22635404 ~ 22637409 (+) False XLOC_018904
TCONS_00037560 lncRNA upstream 512733 22369869 ~ 22372212 (+) False XLOC_018899
TCONS_00037561 lncRNA upstream 513318 22369885 ~ 22371627 (+) True XLOC_018899
TCONS_00039403 lncRNA downstream 162645 23048537 ~ 23051547 (+) False XLOC_018914
TCONS_00039404 lncRNA downstream 164538 23050430 ~ 23051547 (+) True XLOC_018914
TCONS_00039405 lncRNA downstream 274245 23160137 ~ 23164204 (+) False XLOC_018917
TCONS_00039406 lncRNA downstream 274245 23160137 ~ 23164308 (+) True XLOC_018917
TCONS_00039407 lncRNA downstream 419634 23305526 ~ 23308245 (+) True XLOC_018918
TCONS_00037582 mRNA upstream 4709 22878991 ~ 22880236 (+) False XLOC_018911
TCONS_00037580 mRNA upstream 7072 22872726 ~ 22877873 (+) True XLOC_018910
TCONS_00037576 mRNA upstream 33715 22833905 ~ 22851230 (+) False XLOC_018909
TCONS_00037578 mRNA upstream 33848 22845317 ~ 22851097 (+) False XLOC_018909
TCONS_00037579 mRNA upstream 33873 22846757 ~ 22851072 (+) True XLOC_018909
TCONS_00037584 mRNA downstream 6944 22892836 ~ 22901407 (+) True XLOC_018912
TCONS_00037585 mRNA downstream 99186 22985078 ~ 22986277 (+) True XLOC_018913
TCONS_00037587 mRNA downstream 222528 23108420 ~ 23131600 (+) False XLOC_018915
TCONS_00037586 mRNA downstream 222528 23108420 ~ 23131600 (+) False XLOC_018915
TCONS_00037588 mRNA downstream 226652 23112544 ~ 23126342 (+) True XLOC_018915
TCONS_00037570 other upstream 222381 22636887 ~ 22662564 (+) True XLOC_018904
TCONS_00037569 other upstream 247536 22635414 ~ 22637409 (+) False XLOC_018904
TCONS_00037551 other upstream 848768 22036061 ~ 22036177 (+) True XLOC_018892
TCONS_00037550 other upstream 964736 21920077 ~ 21920209 (+) True XLOC_018891
TCONS_00037548 other upstream 975151 21894067 ~ 21909794 (+) False XLOC_018890
TCONS_00037591 other downstream 798828 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037595 other downstream 1350259 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037602 other downstream 1661632 24547524 ~ 24547600 (+) True XLOC_018926
TCONS_00037603 other downstream 1782329 24668221 ~ 24668337 (+) True XLOC_018927
TCONS_00037604 other downstream 1863770 24749662 ~ 24749779 (+) True XLOC_018928

Expression Profile

//