RNA id: TCONS_00037574


Basic Information

Item Value
RNA id TCONS_00037574
length 676
lncRNA type retained_intron
GC content 0.46
exon number 8
gene id XLOC_018907
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22738939 ~ 22796064 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgcaaaTTGTGCCTTTAATATTCACCAATCTGTCTTGCAGGCATGGCATCATCACCCTTCAGTCTCTTTCTGAATCCAACAGACGGTTGTGGATGGAGGCTATGGATGGAAAAGAGCCGATTTACACCCTTCCAGCACTTCTGAGCAAGAAAGAGGAAACATTCCTGAACGAAGCAGGTTTTAACTTTGTGAGGAAGTGTATTGAGTCTGTGGAAGCCAGAGGTATCAACACATTGGGGCTGTACAGGATAGGTGGAGTAAACTCTAAAGTCCAGCGGCTGATGACCTCAGTCTTTGCGGCCAAAGCTCCTGCAGACTTGGACCTTGATCCAGATACCTGGGATAACAAGACCATCACCAGTGGCTTGAAGAACTACCTCAGATGTCTGGCAGAACCTCTTATGACCTACAGACTCCATAAAGACTTCATCATGGCAGTCAAATCTGATGATCAGAATTACAGGGTCTGTGCTGTTCATGCGCTCGTTTACAAACTTCCTGACAAGAATAAAGAGATGCTGAATCTTCTGATCAAACATCTACACGTGGTTTCTACACATAGTCAGAAGAATCTGATGACCGTGTCTAACCTGGGTGTGATTTTTGGACCAACGCTCATGCGCTCTCAGGAGGAGACGGTCGCTGCCATGATGAACATCAAGTTCCAGAATATT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8077 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP42 (Rho GTPase activating protein 42).

Ensembl:

ensembl_id ENSDART00000151241

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039402 lncRNA upstream 43973 22720214 ~ 22733107 (+) True XLOC_018906
TCONS_00037568 lncRNA upstream 139671 22635404 ~ 22637409 (+) False XLOC_018904
TCONS_00037560 lncRNA upstream 404868 22369869 ~ 22372212 (+) False XLOC_018899
TCONS_00037561 lncRNA upstream 405453 22369885 ~ 22371627 (+) True XLOC_018899
TCONS_00039168 lncRNA upstream 551182 22225366 ~ 22225898 (+) True XLOC_018896
TCONS_00037583 lncRNA downstream 101713 22884945 ~ 22885892 (+) True XLOC_018911
TCONS_00039403 lncRNA downstream 265305 23048537 ~ 23051547 (+) False XLOC_018914
TCONS_00039404 lncRNA downstream 267198 23050430 ~ 23051547 (+) True XLOC_018914
TCONS_00039405 lncRNA downstream 376905 23160137 ~ 23164204 (+) False XLOC_018917
TCONS_00039406 lncRNA downstream 376905 23160137 ~ 23164308 (+) True XLOC_018917
TCONS_00037571 mRNA upstream 71733 22697059 ~ 22705347 (+) True XLOC_018905
TCONS_00037567 mRNA upstream 142154 22630627 ~ 22634926 (+) True XLOC_018903
TCONS_00037566 mRNA upstream 142921 22630297 ~ 22634159 (+) False XLOC_018903
TCONS_00037565 mRNA upstream 211910 22558187 ~ 22565170 (+) True XLOC_018902
TCONS_00037564 mRNA upstream 348752 22423286 ~ 22428328 (+) True XLOC_018901
TCONS_00037575 mRNA downstream 45268 22828500 ~ 22832715 (+) True XLOC_018908
TCONS_00037576 mRNA downstream 50673 22833905 ~ 22851230 (+) False XLOC_018909
TCONS_00037577 mRNA downstream 57014 22840246 ~ 22847348 (+) False XLOC_018909
TCONS_00037578 mRNA downstream 62085 22845317 ~ 22851097 (+) False XLOC_018909
TCONS_00037579 mRNA downstream 63525 22846757 ~ 22851072 (+) True XLOC_018909
TCONS_00037570 other upstream 114516 22636887 ~ 22662564 (+) True XLOC_018904
TCONS_00037569 other upstream 139671 22635414 ~ 22637409 (+) False XLOC_018904
TCONS_00037551 other upstream 740903 22036061 ~ 22036177 (+) True XLOC_018892
TCONS_00037550 other upstream 856871 21920077 ~ 21920209 (+) True XLOC_018891
TCONS_00037548 other upstream 867286 21894067 ~ 21909794 (+) False XLOC_018890
TCONS_00037591 other downstream 901488 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037595 other downstream 1452919 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037602 other downstream 1764292 24547524 ~ 24547600 (+) True XLOC_018926
TCONS_00037603 other downstream 1884989 24668221 ~ 24668337 (+) True XLOC_018927
TCONS_00037604 other downstream 1966430 24749662 ~ 24749779 (+) True XLOC_018928

Expression Profile

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