RNA id: TCONS_00037575


Basic Information

Item Value
RNA id TCONS_00037575
length 1223
RNA type mRNA
GC content 0.38
exon number 7
gene id XLOC_018908
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22828500 ~ 22832715 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTAGAAATATGACTTATCAGTATCTGACTCATAAAATCCCAAACGTAATTTTTGTTGGACTTACTGAGAAGTCAAATGTCACTTCACAGGCACAAGCATCGCTCTAAAGCCTAAAACGTTTGCTTGATGGACCTTTTTTCTCCCCCAGACGAGAGACTCTTTTTTAGTTGTCATGGTAACAACAACAATAGGCATCATGGCGGAGGAGAAACTTTCATTTGAACAAACGTTTAACTTTAATCTGCTTTCCACGAAAAGCTTTAATTTTCAGGAAGACCCTAAAACATCGCGACTTCTGATGAAATGGTCCATGCTGGGTCGAATTACAGCACAAGCCTTCAACTTTGATCAATCTTTCCAGCCTTATAGAAGCAATGACTTTGCCTGGAATTTCTTTCAAGATCCATGCGTGAAGCACAATTTAAATGTCCTTGATCCCACCGGATCATGGACACGGCTGGGAGACATAACACATGTAAATGTTGAAGTTGTCCCATGTACAAAAGTTTCAGTGGATATATTCGATCCAATTTACTCAAATGGAATTTTGCGTCCCTCCGGACACATTGTCAAATGTTACCATGAAATATATCCTGACTTTGATGAGCTACGGATGCTTTTGCTTGAAGCAGACTCTGAATATCATCATATAATCAGCCCCAGTGATCGTCAGGAGTTTTTGTTCCGGCTGTTCAAACATATGGTATTGGGTGGTGAACTTTGCCAATATGAAGATGTCATCGATCCTTACATTGAGACCGTGAAAATAATGTACAAAGACTTGGTCAGTGTTCAGAAGGATACTGATACAAAAGAGATCAATGTGGTCACAACAGTTTTAAAAGTTTCAGCTTATGATCACAGTGGATTGTGCTACCCATCTGCTACAGAAAACAAGCAGACATTTGCTTACCTCTGTATTGATCCTTGTAAAAGGCATGTGTATGTTTTGTTCCATTCATTTGGTATAGGGGATTTTTCAGGGAATTGAGCGCTCTCAATCTAGATCTATATAAAACACTGACATTAAAATTAGACAGTACGCTTTTTCCACCTACGCGTATCAACCAGGTGAggagaacatttattaaaaatcaattgttcaaatcaaaattaaaatttgGTCAGCATCATCATATTGTTTCTAGAATAAGAATATAATTTAGCAagctcagttttgttttgtttaatgtgcTTGAAACAATAAAGTGTTCAATTCTT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040724-203 Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 38. Orthologous to human CFAP300 (cilia and flagella associated protein 300).

Ensembl:

ensembl_id ENSDART00000151109

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037574 lncRNA upstream 45268 22777080 ~ 22783232 (+) True XLOC_018907
TCONS_00039402 lncRNA upstream 95393 22720214 ~ 22733107 (+) True XLOC_018906
TCONS_00037568 lncRNA upstream 191091 22635404 ~ 22637409 (+) False XLOC_018904
TCONS_00037560 lncRNA upstream 456288 22369869 ~ 22372212 (+) False XLOC_018899
TCONS_00037561 lncRNA upstream 456873 22369885 ~ 22371627 (+) True XLOC_018899
TCONS_00037583 lncRNA downstream 52230 22884945 ~ 22885892 (+) True XLOC_018911
TCONS_00039403 lncRNA downstream 215822 23048537 ~ 23051547 (+) False XLOC_018914
TCONS_00039404 lncRNA downstream 217715 23050430 ~ 23051547 (+) True XLOC_018914
TCONS_00039405 lncRNA downstream 327422 23160137 ~ 23164204 (+) False XLOC_018917
TCONS_00039406 lncRNA downstream 327422 23160137 ~ 23164308 (+) True XLOC_018917
TCONS_00037572 mRNA upstream 32436 22738939 ~ 22796064 (+) False XLOC_018907
TCONS_00037573 mRNA upstream 32436 22738945 ~ 22796064 (+) False XLOC_018907
TCONS_00037571 mRNA upstream 123153 22697059 ~ 22705347 (+) True XLOC_018905
TCONS_00037567 mRNA upstream 193574 22630627 ~ 22634926 (+) True XLOC_018903
TCONS_00037566 mRNA upstream 194341 22630297 ~ 22634159 (+) False XLOC_018903
TCONS_00037576 mRNA downstream 1190 22833905 ~ 22851230 (+) False XLOC_018909
TCONS_00037577 mRNA downstream 7531 22840246 ~ 22847348 (+) False XLOC_018909
TCONS_00037578 mRNA downstream 12602 22845317 ~ 22851097 (+) False XLOC_018909
TCONS_00037579 mRNA downstream 14042 22846757 ~ 22851072 (+) True XLOC_018909
TCONS_00037580 mRNA downstream 40011 22872726 ~ 22877873 (+) True XLOC_018910
TCONS_00037570 other upstream 165936 22636887 ~ 22662564 (+) True XLOC_018904
TCONS_00037569 other upstream 191091 22635414 ~ 22637409 (+) False XLOC_018904
TCONS_00037551 other upstream 792323 22036061 ~ 22036177 (+) True XLOC_018892
TCONS_00037550 other upstream 908291 21920077 ~ 21920209 (+) True XLOC_018891
TCONS_00037548 other upstream 918706 21894067 ~ 21909794 (+) False XLOC_018890
TCONS_00037591 other downstream 852005 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037595 other downstream 1403436 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037602 other downstream 1714809 24547524 ~ 24547600 (+) True XLOC_018926
TCONS_00037603 other downstream 1835506 24668221 ~ 24668337 (+) True XLOC_018927
TCONS_00037604 other downstream 1916947 24749662 ~ 24749779 (+) True XLOC_018928

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_06032635_06035821.mRNA True 1545 mRNA 0.38 5 CI01000006 6031720 ~ 6035821 (-)