RNA id: TCONS_00039404


Basic Information

Item Value
RNA id TCONS_00039404
length 642
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_018914
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 23048537 ~ 23051547 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttttttTGAGAAATCAAAATTTTATTGAAAGATAGAACACTGAAAGGTAAAGGGGTCGAACAAAGGAGTGGAAAATCAGACAAGCTTACTGTACAAAGATAGAATACATAGAGGATCTTCAGCTAAGTGTAGACTGAAATAAAGTGGCTTCTGCAAATCTCGATAAAAGACTATTTTCACGCTATGTGTCTACAGCTGACGTGAAAAGAAGATGAGGGTAAAATCTCTGCCTTCACTGCCCTCTTTTAAAACATCATCTATTTGATCTTTCCTGAGATCAAACGTCTAGAGCAGCTAATCAATTTCTCTTCAAGGAATTGAaagcacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgccgtaGCGTGCTTGAAAGCATCATTGTGCAGCAGAATGAAATCCAGCTCAGGCCGAGGCTTTGGTTTAGATCACCTTGTGACTGTAGCgtggtgttgtttttttaaagcttcACTTTACGATGACGACAGAGGCGCTGTGAATGGACTCCATGACGGCTGCCAGGCGACTGCACAGATCGTGAGGGGACTTCCTCACTTTAGGGGGTTCCTTCAGCACCACTCGTTCTGCAGAGCAGTCTAGAACTCTGGGCAGGAACTCACTGAGCTTTTCTTGAAGAGAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037583 lncRNA upstream 164538 22884945 ~ 22885892 (+) True XLOC_018911
TCONS_00037574 lncRNA upstream 267198 22777080 ~ 22783232 (+) True XLOC_018907
TCONS_00039402 lncRNA upstream 317323 22720214 ~ 22733107 (+) True XLOC_018906
TCONS_00037568 lncRNA upstream 413021 22635404 ~ 22637409 (+) False XLOC_018904
TCONS_00037561 lncRNA upstream 678803 22369885 ~ 22371627 (+) True XLOC_018899
TCONS_00039405 lncRNA downstream 108590 23160137 ~ 23164204 (+) False XLOC_018917
TCONS_00039406 lncRNA downstream 108590 23160137 ~ 23164308 (+) True XLOC_018917
TCONS_00039407 lncRNA downstream 253979 23305526 ~ 23308245 (+) True XLOC_018918
TCONS_00037598 lncRNA downstream 1371651 24423198 ~ 24438842 (+) False XLOC_018922
TCONS_00037597 lncRNA downstream 1371651 24423198 ~ 24438842 (+) False XLOC_018922
TCONS_00037585 mRNA upstream 64153 22985078 ~ 22986277 (+) True XLOC_018913
TCONS_00037584 mRNA upstream 149023 22892836 ~ 22901407 (+) True XLOC_018912
TCONS_00037581 mRNA upstream 162055 22878834 ~ 22888375 (+) False XLOC_018911
TCONS_00037582 mRNA upstream 170194 22878991 ~ 22880236 (+) False XLOC_018911
TCONS_00037580 mRNA upstream 172557 22872726 ~ 22877873 (+) True XLOC_018910
TCONS_00037587 mRNA downstream 56873 23108420 ~ 23131600 (+) False XLOC_018915
TCONS_00037586 mRNA downstream 56873 23108420 ~ 23131600 (+) False XLOC_018915
TCONS_00037588 mRNA downstream 60997 23112544 ~ 23126342 (+) True XLOC_018915
TCONS_00037589 mRNA downstream 83775 23135322 ~ 23156308 (+) False XLOC_018916
TCONS_00037590 mRNA downstream 83848 23135395 ~ 23146551 (+) True XLOC_018916
TCONS_00037570 other upstream 387866 22636887 ~ 22662564 (+) True XLOC_018904
TCONS_00037569 other upstream 413021 22635414 ~ 22637409 (+) False XLOC_018904
TCONS_00037551 other upstream 1014253 22036061 ~ 22036177 (+) True XLOC_018892
TCONS_00037550 other upstream 1130221 21920077 ~ 21920209 (+) True XLOC_018891
TCONS_00037548 other upstream 1140636 21894067 ~ 21909794 (+) False XLOC_018890
TCONS_00037591 other downstream 633173 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037595 other downstream 1184604 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037602 other downstream 1495977 24547524 ~ 24547600 (+) True XLOC_018926
TCONS_00037603 other downstream 1616674 24668221 ~ 24668337 (+) True XLOC_018927
TCONS_00037604 other downstream 1698115 24749662 ~ 24749779 (+) True XLOC_018928