Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00037590 |
| length | 1212 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 8 |
| gene id | XLOC_018916 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007132.7 |
| NCBI id | CM002905.2 |
| chromosome length | 45934066 |
| location | 23135322 ~ 23156308 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042391 | regulation of membrane potential | biological_process |
| GO:0050877 | nervous system process | biological_process |
| GO:0034220 | ion transmembrane transport | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0022850 | serotonin-gated cation-selective channel activity | molecular_function |
| GO:0015276 | ligand-gated ion channel activity | molecular_function |
| GO:0004888 | transmembrane signaling receptor activity | molecular_function |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005230 | extracellular ligand-gated ion channel activity | molecular_function |
| GO:0030594 | neurotransmitter receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-071012-5 | Predicted to enable serotonin-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in irritable bowel syndrome. Orthologous to human HTR3A (5-hydroxytryptamine receptor 3A). |
| ensembl_id | ENSDART00000125907 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00039403 | lncRNA | upstream | 83848 | 23048537 ~ 23051547 (+) | False | XLOC_018914 |
| TCONS_00039404 | lncRNA | upstream | 83848 | 23050430 ~ 23051547 (+) | True | XLOC_018914 |
| TCONS_00037583 | lncRNA | upstream | 249503 | 22884945 ~ 22885892 (+) | True | XLOC_018911 |
| TCONS_00037574 | lncRNA | upstream | 352163 | 22777080 ~ 22783232 (+) | True | XLOC_018907 |
| TCONS_00039402 | lncRNA | upstream | 402288 | 22720214 ~ 22733107 (+) | True | XLOC_018906 |
| TCONS_00039405 | lncRNA | downstream | 13586 | 23160137 ~ 23164204 (+) | False | XLOC_018917 |
| TCONS_00039406 | lncRNA | downstream | 13586 | 23160137 ~ 23164308 (+) | True | XLOC_018917 |
| TCONS_00039407 | lncRNA | downstream | 158975 | 23305526 ~ 23308245 (+) | True | XLOC_018918 |
| TCONS_00037598 | lncRNA | downstream | 1276647 | 24423198 ~ 24438842 (+) | False | XLOC_018922 |
| TCONS_00037597 | lncRNA | downstream | 1276647 | 24423198 ~ 24438842 (+) | False | XLOC_018922 |
| TCONS_00037587 | mRNA | upstream | 3795 | 23108420 ~ 23131600 (+) | False | XLOC_018915 |
| TCONS_00037586 | mRNA | upstream | 3795 | 23108420 ~ 23131600 (+) | False | XLOC_018915 |
| TCONS_00037588 | mRNA | upstream | 9053 | 23112544 ~ 23126342 (+) | True | XLOC_018915 |
| TCONS_00037585 | mRNA | upstream | 149118 | 22985078 ~ 22986277 (+) | True | XLOC_018913 |
| TCONS_00037584 | mRNA | upstream | 233988 | 22892836 ~ 22901407 (+) | True | XLOC_018912 |
| TCONS_00037594 | mRNA | downstream | 806630 | 23953181 ~ 24412427 (+) | False | XLOC_018920 |
| TCONS_00037593 | mRNA | downstream | 806630 | 23953181 ~ 24412427 (+) | False | XLOC_018920 |
| TCONS_00037592 | mRNA | downstream | 806630 | 23953181 ~ 24412427 (+) | False | XLOC_018920 |
| TCONS_00037596 | mRNA | downstream | 1140852 | 24287403 ~ 24412427 (+) | True | XLOC_018920 |
| TCONS_00037599 | mRNA | downstream | 1389682 | 24536233 ~ 24537058 (+) | False | XLOC_018925 |
| TCONS_00037570 | other | upstream | 472831 | 22636887 ~ 22662564 (+) | True | XLOC_018904 |
| TCONS_00037569 | other | upstream | 497986 | 22635414 ~ 22637409 (+) | False | XLOC_018904 |
| TCONS_00037551 | other | upstream | 1099218 | 22036061 ~ 22036177 (+) | True | XLOC_018892 |
| TCONS_00037550 | other | upstream | 1215186 | 21920077 ~ 21920209 (+) | True | XLOC_018891 |
| TCONS_00037548 | other | upstream | 1225601 | 21894067 ~ 21909794 (+) | False | XLOC_018890 |
| TCONS_00037591 | other | downstream | 538169 | 23684720 ~ 23684836 (+) | True | XLOC_018919 |
| TCONS_00037595 | other | downstream | 1089600 | 24236151 ~ 24236272 (+) | True | XLOC_018921 |
| TCONS_00037602 | other | downstream | 1400973 | 24547524 ~ 24547600 (+) | True | XLOC_018926 |
| TCONS_00037603 | other | downstream | 1521670 | 24668221 ~ 24668337 (+) | True | XLOC_018927 |
| TCONS_00037604 | other | downstream | 1603111 | 24749662 ~ 24749779 (+) | True | XLOC_018928 |
