RNA id: TCONS_00039407


Basic Information

Item Value
RNA id TCONS_00039407
length 2720
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id XLOC_018918
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 23305526 ~ 23308245 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGTCTCTGAAATCCACACGGCCAACTCATGAGTATTTCTTTCCACGCAGCAGTCTGTTCAGTTATCTTTGTAAACAAGATAAGGTCAATCTAAAAAAGAGATGAAAGAGACCCACAGTTAAATGCAGCCacaatgtttaattattattgcaGTTGTTCGTTTTCTTGTTTCTAAATAAAAAGCCGTCATACCAATTGCTTTAGTACATAGAAgaaattcacaaaaataaaaataaattagaaatctATTTTTACCAAATCAGTATTGTAAATAAAGACAAATACATAatcttttaacatttaaaaatattttttaccaaCAGATTTAAAGACAAAATCCATTTAAAAGTCACAAAATAAAGCACCATAATAAATGATAAGCGGCCCACATGAGAAACATGTAAACTTGTCTTTAGTGCTAGTAAATGCTGGCAGTAATCAAGCCTTTGTTTCTATGTGTTCAAGCTCGCCTCACAAAGCCCATCAACAGCCTCCTGAAATGAAATGGCATCTTATTCAGTATTCTCATCACAGACAGGGATACTGAGCGGAGCATGGAGAGTGAGGCAAGCTGTTGCCAGGAATAGTTGGAACAGAGGATGACACAAAACAACTCAGAGCTCTTAAAACGCACCAAAAtgtcatttgtattttaaatacaactccatgtaaattaaatgtattctACAATACatgatatatataaaaataaatcaacccACACTCAACACTataatataatgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaaccatacCCTGATGATTAAGATTACTTTTGGGTGAACACTGTCATACTGGACTAGCAATTTACACTTGGAAAGCATGAGAAATTCATCCCTTTATGTATATTATTACATACATTTAAGATAGTAGATAAAAAAGCAGGAGATTTACTCAAACATGTAATATTTCTCCCACTGTATCTGATCATCAAGAAGCCTCGGCAAACAAGAGCAGCCTAGTAAAGGCTCTTTAAATCAAACACCATGATCTTCGCGGTGAATGACGGGCATTTTCATTGTGAATGTACCGTCTCAGGCAGCAAATAAGCTCAAGTTATGATAAAGGCTGACATGAGAGAAATATTCGAGGGCTTTTTACGCGCAGTTTATTTTACTACAAACGGCAGGAAGGCGAGTAATAAGTGAGGAATGAATACGCTTTCTTTGAAGAGTGCTGTTAACTGATGAGACGTTAGCAATAATGACGCCAATTTACGCACGCGAACTGTACATCACAAGTAAGACAAGAAAAGTCAAGAAAACATCAATGCGTATTGATATTATTTAACAACTGCCGTTATCTGCCTTATATGCGATAAAAAAGACCGATGAAAAGTCCAGTCAGAGCTCATTTGACTGATCAATACATGATCATTCGACTGTTCACACGTGAATCAATTTAAGAGCCGTTTGTAatttcattacacatgtacacgCACAAACGGGGAAGACAAATAAAATAGCGTTTGGCttgaagtatttttaaagtataatACAATAAAAGGCAAAAGTCATTTCACTTTAAAAACTCACAACCAAATACATTCGGCTCATTTTAAAAGACAGCGGCACGCACCTCCACGGTAGCTTTGATTTAATGATGAGGGCAAAACAAGAATCACCAAAAATACGATATTTGTTCGTTGTTCAGTTATGGCACAGGCTATATAAACTGTCCGACGTTCAATATGAAAGAGTAAAGCTGAAAATAAAGCACATGGAAGCACGTCACTGTCTGGTGCGCGAGCAGACCTCACGTCCCCCGAATACTAACACACACACGCTTACGTCAACATAACATCTCCACATGTGTAAAGATGAACATAAACAGCCATATCCATCAGGTGCCCTGAGCCTGCACCGCACTCACTGACAGCCGCACTTTTACTTTTCGCTGCACTCACAATTCACCTTCACTTGAAGCAACAGTAGAAACACTGTAACTTGATGGGATGCTGAGCGCAAAACACATCTGATCAACACAACGCGGATCATCTTCTAATGTGAACATTTTTCCACCCcgaactgaaaacacacacaaggaTGGGTCTGTCAGCAGGTGTGGGTGTTTTAAAGGTGCGCGCCTGTACTCACCTGTGTTGCGCGTTTGGCTTCCGAGCGTGCGGTTATTAGGACTGTAGCATAGTAACGCTGTTCACAGTACCCGCTCTCTCTCACGCGCACTAACTCCTCTCTGCTCGCCGCTTAGCAAATCAACACGCCGGTGACGTCAGCGCACATCCTCGCCGGAGTCCTGACAAACACTGCTAAAGTGAGACACCTAGGGGGCTGTCGAATATAGGCCAGCGTGTCTGGGACACTATCTATCACACAGCGTTTGGACTTTAATCATTAACCTTCAAGCATCATCACCTTTGCTACTACTTTACAACCGGGGAAGTTCTCAATGAGGTCTGCAGGCAGGTCTGAGCCAATGGTCCAGTCATATTTAGAGCTATACATCCAAAATGACTACATTATACTAACTTTGCATGTCCATGTTTACAGTAAAATATGCATGGGTTTTATTTGGTCTTGTATATTTCCCAaacattgtatatgtttttgttATAATGTGTAATGTGACATTCTTTGTTTGATTGGACCAGTAAAACATTCATtctgcaatcaatc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039406 lncRNA upstream 141218 23160137 ~ 23164308 (+) True XLOC_018917
TCONS_00039405 lncRNA upstream 141322 23160137 ~ 23164204 (+) False XLOC_018917
TCONS_00039403 lncRNA upstream 253979 23048537 ~ 23051547 (+) False XLOC_018914
TCONS_00039404 lncRNA upstream 253979 23050430 ~ 23051547 (+) True XLOC_018914
TCONS_00037583 lncRNA upstream 419634 22884945 ~ 22885892 (+) True XLOC_018911
TCONS_00037598 lncRNA downstream 1114953 24423198 ~ 24438842 (+) False XLOC_018922
TCONS_00037597 lncRNA downstream 1114953 24423198 ~ 24438842 (+) False XLOC_018922
TCONS_00039169 lncRNA downstream 1115087 24423332 ~ 24424191 (+) False XLOC_018922
TCONS_00039170 lncRNA downstream 1115087 24423332 ~ 24438577 (+) True XLOC_018922
TCONS_00039171 lncRNA downstream 1128021 24436266 ~ 24436985 (+) True XLOC_018923
TCONS_00037589 mRNA upstream 149218 23135322 ~ 23156308 (+) False XLOC_018916
TCONS_00037590 mRNA upstream 158975 23135395 ~ 23146551 (+) True XLOC_018916
TCONS_00037587 mRNA upstream 173926 23108420 ~ 23131600 (+) False XLOC_018915
TCONS_00037586 mRNA upstream 173926 23108420 ~ 23131600 (+) False XLOC_018915
TCONS_00037588 mRNA upstream 179184 23112544 ~ 23126342 (+) True XLOC_018915
TCONS_00037594 mRNA downstream 644936 23953181 ~ 24412427 (+) False XLOC_018920
TCONS_00037593 mRNA downstream 644936 23953181 ~ 24412427 (+) False XLOC_018920
TCONS_00037592 mRNA downstream 644936 23953181 ~ 24412427 (+) False XLOC_018920
TCONS_00037596 mRNA downstream 979158 24287403 ~ 24412427 (+) True XLOC_018920
TCONS_00037599 mRNA downstream 1227988 24536233 ~ 24537058 (+) False XLOC_018925
TCONS_00037570 other upstream 642962 22636887 ~ 22662564 (+) True XLOC_018904
TCONS_00037569 other upstream 668117 22635414 ~ 22637409 (+) False XLOC_018904
TCONS_00037551 other upstream 1269349 22036061 ~ 22036177 (+) True XLOC_018892
TCONS_00037550 other upstream 1385317 21920077 ~ 21920209 (+) True XLOC_018891
TCONS_00037548 other upstream 1395732 21894067 ~ 21909794 (+) False XLOC_018890
TCONS_00037591 other downstream 376475 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037595 other downstream 927906 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037602 other downstream 1239279 24547524 ~ 24547600 (+) True XLOC_018926
TCONS_00037603 other downstream 1359976 24668221 ~ 24668337 (+) True XLOC_018927
TCONS_00037604 other downstream 1441417 24749662 ~ 24749779 (+) True XLOC_018928

Expression Profile

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