RNA id: TCONS_00037582


Basic Information

Item Value
RNA id TCONS_00037582
length 1246
RNA type mRNA
GC content 0.37
exon number 1
gene id XLOC_018911
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 22878834 ~ 22888375 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGGCGACTCAACGGCTCAAAGATGTCGGACGACGGTGCGAGGGAGGACGCCTGCCGCGAGTATCAGTCCTCGCTGGAAGATCTGACTTTCAACAGCAAACCGCACATCAACATGCTCACCATTCTAGCCGAGGAAAACATCCAGTTCACCAAGGATATCGTCGCAATAATTGAAGCACAAATTGCCAAGGTTTTTatgaaaatagatttatttttttgtttcagtcaTCGTCTATTAGCGCGAATGTGGCCAGTTAGTTCAATGACGACATGACATGAGGCCTGTAACATGGCGGCAACACGGCTAACGTTAGTTCGCTAACCACATTGTGTAAATGGACGTAACATAAGGTTTGTCGTTGTGTTGTAGTTAATAATGATCAAATTCCGAATACACTACTTTTGTGTTTGTTATAAGGGTGTCCTATTTTTGTGACTCAAagtaacatttttacaaattagGCCAGTTAAACCGCATGTTTATCTGTTTGTTGGGTCACAGCTGTTCACAAAGTCGGATTTTACGTTAGCGTTGACGCACAGTGAAGTTAATAATCCACGTATACATTCTCAATCAGATTATAGGATAATGATCGAAACCCAACGTTCCACGTTACGCTAATTACTGTTCACAccaatttgattttaattttattactgattattcattatattatgttatgtgtttctgtgtatttatataattaacCGAGAATTATTAATGGTATGTATCGTTAAACGTATGGATAATGTATCAACAGTAAAACGATATGTGAAATTCCAGGATTACGTAATCAACCCAATGACTCGAATCGCCGTTTTGTTCTTTACAGTTTTGCTCgcatattaattttaaatgaaatgattacATTTGTTGGTATAAACCCACTTTTCAGCTTGCAGTCAATCAGAAAGACGTATTTGCATACTCATTGCTGTAGCTCTGTCATCTCACCAGCTGGTGCACGTGGTTTGCCGCCTATGTATACTGATGGCTGGGTGTTTTTTTGAAAAGctagtgaaattttttttttactcttgtttgttttcaatttatttgaaGTCCTACACTAGATAGAATAGCTGCTCCGTGAAAACGGATTTAAAGTCTTTAATTCAAATGTGCGCCATTAAAATTGCTTTGTACTTGAACTAATAAAGGGATTGGGGTGTTAGATTGCTGAGTAATTTTTCTATCCTTTGCTGCAATGTTAATAAATGGTATATAACTGTGACAATAAACC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006369 termination of RNA polymerase II transcription biological_process
GO:0006378 mRNA polyadenylation biological_process
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000993 RNA polymerase II complex binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03021 Transcription machinery
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-041114-175 Predicted to enable RNA polymerase II complex binding activity and mRNA binding activity. Acts upstream of or within regulation of DNA-templated transcription, termination. Predicted to be part of mRNA cleavage factor complex. Predicted to be active in cytoplasm. Orthologous to human PCF11 (PCF11 cleavage and polyadenylation factor subunit).

Ensembl:

ensembl_id ENSDART00000186399

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037574 lncRNA upstream 95759 22777080 ~ 22783232 (+) True XLOC_018907
TCONS_00039402 lncRNA upstream 145884 22720214 ~ 22733107 (+) True XLOC_018906
TCONS_00037568 lncRNA upstream 241582 22635404 ~ 22637409 (+) False XLOC_018904
TCONS_00037560 lncRNA upstream 506779 22369869 ~ 22372212 (+) False XLOC_018899
TCONS_00037583 lncRNA downstream 4709 22884945 ~ 22885892 (+) True XLOC_018911
TCONS_00039403 lncRNA downstream 168301 23048537 ~ 23051547 (+) False XLOC_018914
TCONS_00039404 lncRNA downstream 170194 23050430 ~ 23051547 (+) True XLOC_018914
TCONS_00039405 lncRNA downstream 279901 23160137 ~ 23164204 (+) False XLOC_018917
TCONS_00039406 lncRNA downstream 279901 23160137 ~ 23164308 (+) True XLOC_018917
TCONS_00037580 mRNA upstream 1118 22872726 ~ 22877873 (+) True XLOC_018910
TCONS_00037576 mRNA upstream 27761 22833905 ~ 22851230 (+) False XLOC_018909
TCONS_00037584 mRNA downstream 12600 22892836 ~ 22901407 (+) True XLOC_018912
TCONS_00037585 mRNA downstream 104842 22985078 ~ 22986277 (+) True XLOC_018913
TCONS_00037587 mRNA downstream 228184 23108420 ~ 23131600 (+) False XLOC_018915
TCONS_00037586 mRNA downstream 228184 23108420 ~ 23131600 (+) False XLOC_018915
TCONS_00037588 mRNA downstream 232308 23112544 ~ 23126342 (+) True XLOC_018915
TCONS_00037570 other upstream 216427 22636887 ~ 22662564 (+) True XLOC_018904
TCONS_00037569 other upstream 241582 22635414 ~ 22637409 (+) False XLOC_018904
TCONS_00037551 other upstream 842814 22036061 ~ 22036177 (+) True XLOC_018892
TCONS_00037550 other upstream 958782 21920077 ~ 21920209 (+) True XLOC_018891
TCONS_00037548 other upstream 969197 21894067 ~ 21909794 (+) False XLOC_018890
TCONS_00037591 other downstream 804484 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037595 other downstream 1355915 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037602 other downstream 1667288 24547524 ~ 24547600 (+) True XLOC_018926
TCONS_00037603 other downstream 1787985 24668221 ~ 24668337 (+) True XLOC_018927
TCONS_00037604 other downstream 1869426 24749662 ~ 24749779 (+) True XLOC_018928

Expression Profile

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