RNA id: TCONS_00039441


Basic Information

Item Value
RNA id TCONS_00039441
length 453
lncRNA type antisense_over
GC content 0.36
exon number 6
gene id XLOC_019048
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 33027901 ~ 33029631 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAGCTCAGGATGTCCAGAGAACAGATGAACATGTAcagaaagagaagaagaagagGTGGCGGAATATAGAAGATATGGACCAGTTAAGCACCAGAAGAAGTCAAACACATGGGATATTTTTCACcagattttttaattattcaatcatCACATTTGgtttaaatTTGCAATATCTCAACATGTTTTCCCTGACTAATCTACTAGAGGTTGTTCCCAAAGAGCAGACAGACTATATAGAGGTTGAAGCACATTTCCAGAGGAAGACTGACTTACTAAAGCACACAGATTGTGAAGAAGAGCTGAGCAGAGGCTCCTGGAAATCAGAGACTGTTGATTAACATTGGAGCAGATATCTGCAAAGCACGAGTACACTCACTTAAATATACATGGAAATAAAGATGCTGAGATCGAATTTTATAATcttccaagtttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039440 lncRNA upstream 269943 32755414 ~ 32757958 (+) True XLOC_019046
TCONS_00039174 lncRNA upstream 616254 32406763 ~ 32411647 (+) True XLOC_019044
TCONS_00039436 lncRNA upstream 928581 32080050 ~ 32099320 (+) False XLOC_019042
TCONS_00039176 lncRNA downstream 219589 33249220 ~ 33326927 (+) False XLOC_019051
TCONS_00039443 lncRNA downstream 219700 33249331 ~ 33357123 (+) False XLOC_019051
TCONS_00039444 lncRNA downstream 219771 33249402 ~ 33330909 (+) False XLOC_019051
TCONS_00039175 lncRNA downstream 219791 33249422 ~ 33258795 (+) False XLOC_019051
TCONS_00039445 lncRNA downstream 219847 33249478 ~ 33315893 (+) False XLOC_019051
TCONS_00037774 mRNA upstream 206479 32820175 ~ 32821422 (+) True XLOC_019047
TCONS_00037770 mRNA upstream 678190 32332616 ~ 32349711 (+) False XLOC_019043
TCONS_00037772 mRNA upstream 678190 32339158 ~ 32349711 (+) True XLOC_019043
TCONS_00037771 mRNA upstream 682552 32338897 ~ 32345349 (+) False XLOC_019043
TCONS_00037766 mRNA upstream 1019058 31811202 ~ 32008843 (+) False XLOC_019038
TCONS_00037775 mRNA downstream 142895 33172526 ~ 33187913 (+) True XLOC_019049
TCONS_00037777 mRNA downstream 158361 33187992 ~ 33212425 (+) False XLOC_019050
TCONS_00037776 mRNA downstream 158361 33187992 ~ 33212425 (+) True XLOC_019050
TCONS_00037778 mRNA downstream 219847 33249478 ~ 33447558 (+) False XLOC_019051
TCONS_00037779 mRNA downstream 281991 33311622 ~ 33447610 (+) True XLOC_019051
TCONS_00037773 other upstream 500557 32464568 ~ 32527344 (+) True XLOC_019045
TCONS_00037769 other upstream 929474 32092771 ~ 32098427 (+) False XLOC_019042
TCONS_00037768 other upstream 997149 32030636 ~ 32030752 (+) True XLOC_019040
TCONS_00037726 other upstream 3041005 29986796 ~ 29986896 (+) True XLOC_019015
TCONS_00037725 other upstream 3421451 29606327 ~ 29606450 (+) True XLOC_019014
TCONS_00037783 other downstream 607452 33637083 ~ 33645997 (+) False XLOC_019056
TCONS_00037784 other downstream 607453 33637084 ~ 33646070 (+) False XLOC_019056
TCONS_00037785 other downstream 607454 33637085 ~ 33646932 (+) False XLOC_019056
TCONS_00037789 other downstream 726479 33756110 ~ 33765245 (+) False XLOC_019057
TCONS_00037790 other downstream 726505 33756136 ~ 33765239 (+) True XLOC_019057

Expression Profile

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