RNA id: TCONS_00039465


Basic Information

Item Value
RNA id TCONS_00039465
length 3095
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_019157
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 41531650 ~ 41534965 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaatttcttgctctattaaacatcattgggaaatatttttaaaaaataataataaattgacaggagggcaaatcattctggcttcaactgtacacacaatACAGGTCAAACATTTGGAATACTTGCGATGTTTAAGGAAATGTCTTATGCTCTGCAGATTCAGACACACTGGGTCTAAAACTAACACTTGGCCTGCATCCTTCCTGACTAAAATTGGCTAGTTGTGTCCTCAAAATTCAAACTAGTTAAAAATCATACCTAACGGGGCATTTACACAATTTTCAACAAGGTTGGGGTAAGGGCTAGGGGTAGGTAAGGCCATTCAATAAGAGATTTTTACTGTATACAATACATTACACCTACCGAAAGTCCTTGTAAACCATATACACAAGCATGTGTATGTAAAAGATATGTGCATTTATGTGTGGTTTATGAGGTCACAGAATTGTATAATTACATGGTTttgacctagttgtactctataAGCTGGTATATGTGTTCTCGTAATTCAAACTAGTTGAAAATCATACCTAACGGGGCATTTACACAATTTTTAACAAGGTTGGGATTATGACTAGATAAGGCCATTTATATAAgaagtttttactgtataaaataaattacGCCTATGGAAAGACCTTGTAAACCATATACACAAGTATGTATATGTAAAAGATCTGTACATGTTTGTGTGGTTTACGAGGTCACAAAATTGTATAATTACATTggtatgacctagttgtactctataAGCTGGTTtatgtgtcctcataattcaaaccAGTTTAAAACCATGCTTGACGGAGCATTTACACAATTTTCAACGAGGTTAGGGCTAGGGATAGGTAAGGCCATTCATTAAGAGGTTTtgactgtataaaataaattacGCCTATCGAAAGTCCTTGTAAACCATATGTGTAGTACGAGTAGGTGTGTGTGGGTTTAGTGGGTCATATTTGTGAGGACATGGACTGGTCAAGTATTTGACAGGAGTCTGGAACATTGTGGTCGCTTGTAGACTGTGGATTGAGTGTAGTTCTCCATGTTTCCGAGAGAGAAGAGACTTCTCTGCATTATTACTAAAACTGGGCATTGGGTTTCTGTGATGACATCATTCCACAAGCTCAGTGTGAAAGAAGATGAAACATGTCTGGGTCACATTTCACCcctaaaaaagaagaagaaagaaataattgaatagttgtttattttttgtaaatccatcagaggccagtCACATTTCTGTAAATGTTTTTCTCCTTTTTGCTCTGAAAGGTAACAGAAGTTAGCATTAGTGCCCTGTAAAAGTACCGTGAAAAGGAAAGGAAGTTAGCGTTAGTGCCCTGTAGCAGTATCATAAAAAGGAACAGAATTTAGCATTAGCACCCTggaaaaagtaacacaaaaaaaagagaagTTAGCATAGCAGCCCATAGAAGTATCGCAAAAGTTAACATTAGCTCCCTGTAAAAGCATCATGAGAAGGAACAGAAGTTATCGTTAACACCCTGTAGAAGTATTGTGAAAGAAAGAGAAGTTAGCATTAGCACCTCATAGAAGTATCACAATAAGGAACTGAAGTTAGCGTTAGCGCCCTACAGAAGTATCCcgaaaagaaacagaagttaGGGTTAGCACCCTACAGAAGTATCACAAAAAAATAGAAGTTAGCATTAACTCCCTGTACAAGTATCACACAAAGGAACAGAAGTTAATGTTAGCGCCTTGTAGACGTTTTACTAAAAAGGAACAGAAGTTAGTGTTAGCACCACATATAAGTATCGCAAAAAGGAACAGAAGTTAGCTTTAGCGCGCCATAGAAGTATAGCGAAAAGGAATAAAAGTTTGCGTTAGCGCGCCATAGAAGTATCACAAAAAGGAACAGAAGTTAGCGTTAGCGGCCAGTAGAAGTTTTACTAAAAAGGAACAGAAGTTAGCCTTAGCACCACATATAAGcattgtgaaaaggaacaaaagttagCGTTAGCACCACATATAAGCATCGCGAATAGGAACAGAAGTTTCTGTTAGCGCGTCATAAAAGTATCACAAAAGCAACAGACGCTAACATTAGCagcccgtagcgttcattttacacacaaaatgggGCCAGACAAAGCCCTGGGCACATGTTTTGCAGTTTTCAAATGTATCCTTGGGCATATATTCCCAACATTCCCAAAATGTCGCCACCTAAACATGACAGTTAAATGAATTTAGCGCTAAAgcaaccaaaagaaaaaaatagtgcaGATATATCAGGACAGCATtgtaattcattttaaagactttcttctttttattttggggtgaggTATGAATGTGAAGGTGACCTTGACATGGTATTGTGAGATAAAGTCTCAGCAGCAGATATAAGCTCTAACTTCACACTTTTCTTGCACTGCAGTGCTGCCGTTGCCAAGGCAATCCAACATATCCATTATCTGTCATATCAGACTTCACATTTGCTTTAGAGTAAACTACTGTCATATGTGATGAAGACCTCTGCCTTCctaaacagaatacagtctcgcACACTAATATTGTCACGTATGATATGCAGAACATTGTTTTTGGACCTACCTCATCTCTGTACCTGATATACTGTATCGCATAATGTCTCCATATTTTCACAAGGCAAGCATAACTCACTCCCATCAGTTTCCGGTGCGTGTCTTGTAgatatttcacattattattattattgtttctctatttaaattaatttcttcaACGTTATGCATGACGTGTGTCttaaggacttttattttgacgtcAGGTTTGTTGCAGCTACTATAAAGTGCTggtaatacattttatattcacgcttttactatttattttcgTATTTTGTTATGTTATCATCTATATTCTTATTTGAGATCTGTATCAAAGTAATCAAATGTATTCATAGAACAAACTATTCTTAATAAATCAATCTCATAGTCAGTTGTTTGGCTTTTTGTGGATTCATGCTGCATGAATATTGAGGAAATCTTCACAACTGCATCAGTGTTTACACAAAAATGTTCATCTCATATAAATACATGTTATTAATGTTGAATATtgttgtgggcgcaaatgccttgttg

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0042551 neuron maturation biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0007626 locomotory behavior biological_process
GO:0009416 response to light stimulus biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0017075 syntaxin-1 binding molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039463 lncRNA upstream 512213 41016429 ~ 41019437 (+) False XLOC_019154
TCONS_00039462 lncRNA upstream 512213 41016429 ~ 41019437 (+) False XLOC_019154
TCONS_00039461 lncRNA upstream 512213 41016429 ~ 41019437 (+) False XLOC_019154
TCONS_00039464 lncRNA upstream 512213 41016445 ~ 41019437 (+) True XLOC_019154
TCONS_00039460 lncRNA upstream 742291 40782384 ~ 40789359 (+) True XLOC_019152
TCONS_00039201 lncRNA downstream 12716 41547681 ~ 41553387 (+) True XLOC_019158
TCONS_00039470 lncRNA downstream 63174 41598139 ~ 41601982 (+) True XLOC_019159
TCONS_00039472 lncRNA downstream 360179 41895144 ~ 41903528 (+) False XLOC_019163
TCONS_00039471 lncRNA downstream 360179 41895144 ~ 41903528 (+) False XLOC_019163
TCONS_00039473 lncRNA downstream 360226 41895191 ~ 41903528 (+) False XLOC_019163
TCONS_00037931 mRNA upstream 216 41511469 ~ 41531434 (+) True XLOC_019156
TCONS_00037930 mRNA upstream 50678 41468856 ~ 41480972 (+) True XLOC_019155
TCONS_00037929 mRNA upstream 54231 41468210 ~ 41477419 (+) False XLOC_019155
TCONS_00037928 mRNA upstream 571941 40944530 ~ 40959709 (+) True XLOC_019153
TCONS_00037927 mRNA upstream 822411 40695345 ~ 40709239 (+) True XLOC_019151
TCONS_00037933 mRNA downstream 114371 41649336 ~ 41749907 (+) False XLOC_019161
TCONS_00037934 mRNA downstream 114373 41649338 ~ 41777589 (+) False XLOC_019161
TCONS_00037935 mRNA downstream 162587 41697552 ~ 41777754 (+) False XLOC_019161
TCONS_00037936 mRNA downstream 208528 41743493 ~ 41777589 (+) True XLOC_019161
TCONS_00037937 mRNA downstream 302645 41837610 ~ 41861508 (+) False XLOC_019162
TCONS_00037914 other upstream 1130638 40400938 ~ 40401012 (+) True XLOC_019145
TCONS_00037913 other upstream 1130862 40400714 ~ 40400788 (+) True XLOC_019144
TCONS_00037853 other upstream 2962249 38569285 ~ 38569401 (+) True XLOC_019097
TCONS_00037832 other upstream 5043472 36488062 ~ 36488178 (+) True XLOC_019079
TCONS_00037829 other upstream 5340197 36191330 ~ 36191453 (+) True XLOC_019077
TCONS_00037932 other downstream 105014 41639979 ~ 41640058 (+) True XLOC_019160
TCONS_00037941 other downstream 1132950 42667915 ~ 42668034 (+) True XLOC_019168
TCONS_00037947 other downstream 1305991 42840956 ~ 42841071 (+) True XLOC_019171
TCONS_00037951 other downstream 1524283 43059248 ~ 43059365 (+) True XLOC_019174
TCONS_00037955 other downstream 1643852 43178817 ~ 43206304 (+) False XLOC_019177

Expression Profile

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