RNA id: TCONS_00039234


Basic Information

Item Value
RNA id TCONS_00039234
length 468
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id XLOC_019432
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 12975918 ~ 12980878 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGGCACAGGTGCAGTTGTGGCCAGTCGCTCTCCTCCAGGTGTAACTTCACTACTGAGTGTCATTCAGAGACGCCTCCATCTGCTGCGGACGGTCCTGTAGATCTCAACCTCACATGTCCAAGATCCTGCTCTCCAGCTTTCATCTCTGCAAGTTGTCACGCTCATGCTGCATGCTGAGAACCGGAAGTGTCAACATCCTGGCCAGACTCTGTCTTGTTTAGATGCAGCTGCTCTCAGCGATATCGTCCCTGCCAGTCCATCCCGTCCAACTGTCCATCTCCGGTTCGCTGTCCAGACGCGTGGCGTTGTGTCCTGTGGCCCTGCGCTCCCGTCATGTGAAGATGAATGGAGCTCTGTCACTCGGGCCGCTCTTCAGAGGCCTGCGCTCTGCGTGAGGAAAGTGCCAGTCATTAACGGTGGAGGCAGGATGAAAAATGAGTTCATTTACGGCCAAGTCCTGCGAGAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039593 lncRNA downstream 214237 12692717 ~ 12761681 (-) True XLOC_019430
TCONS_00039591 lncRNA downstream 214368 12588701 ~ 12761550 (-) False XLOC_019430
TCONS_00039233 lncRNA downstream 214368 12588861 ~ 12761550 (-) False XLOC_019430
TCONS_00039586 lncRNA downstream 214420 12581514 ~ 12761498 (-) False XLOC_019430
TCONS_00039232 lncRNA downstream 215559 12588701 ~ 12760359 (-) False XLOC_019430
TCONS_00038320 lncRNA upstream 75008 13055886 ~ 13061774 (-) False XLOC_019434
TCONS_00038319 lncRNA upstream 75008 13055886 ~ 13061774 (-) True XLOC_019434
TCONS_00038325 lncRNA upstream 118060 13098938 ~ 13123124 (-) True XLOC_019436
TCONS_00039594 lncRNA upstream 303522 13284400 ~ 13287747 (-) False XLOC_019439
TCONS_00039595 lncRNA upstream 303522 13284400 ~ 13287769 (-) True XLOC_019439
TCONS_00038316 mRNA downstream 226417 12745431 ~ 12749501 (-) True XLOC_019431
TCONS_00038309 mRNA downstream 703375 12079897 ~ 12272543 (-) False XLOC_019424
TCONS_00038310 mRNA downstream 703375 12271978 ~ 12272543 (-) True XLOC_019424
TCONS_00038308 mRNA downstream 856207 12079878 ~ 12119711 (-) False XLOC_019424
TCONS_00038304 mRNA downstream 939784 12023796 ~ 12036134 (-) False XLOC_019423
TCONS_00038317 mRNA upstream 64510 13045388 ~ 13051613 (-) False XLOC_019433
TCONS_00038318 mRNA upstream 68436 13049314 ~ 13055195 (-) True XLOC_019433
TCONS_00038321 mRNA upstream 85827 13066705 ~ 13085242 (-) True XLOC_019435
TCONS_00038322 mRNA upstream 112258 13093136 ~ 13123185 (-) False XLOC_019436
TCONS_00038323 mRNA upstream 112663 13093541 ~ 13123176 (-) False XLOC_019436
TCONS_00038313 other downstream 463196 12512607 ~ 12512722 (-) True XLOC_019429
TCONS_00038307 other downstream 939784 12027968 ~ 12036134 (-) True XLOC_019423
TCONS_00038306 other downstream 939844 12027968 ~ 12036074 (-) False XLOC_019423
TCONS_00038297 other downstream 1011232 11959300 ~ 11964686 (-) False XLOC_019420
TCONS_00038324 other upstream 114413 13095291 ~ 13123104 (-) False XLOC_019436
TCONS_00038328 other upstream 237030 13217908 ~ 13225402 (-) False XLOC_019438
TCONS_00038335 other upstream 667749 13648627 ~ 13657072 (-) False XLOC_019441
TCONS_00038337 other upstream 670948 13651826 ~ 13662194 (-) False XLOC_019441
TCONS_00038344 other upstream 887784 13868662 ~ 13868778 (-) True XLOC_019446

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000007_00081110_00100896.mRNA True 2570 mRNA 0.41 4 CI01000007 80770 ~ 102397 (+)