RNA id: TCONS_00039586


Basic Information

Item Value
RNA id TCONS_00039586
length 1875
lncRNA type sense_over
GC content 0.38
exon number 6
gene id XLOC_019430
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 12581514 ~ 12761681 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTTCAGATGAGCCATTTTGAAGATGTGGCAAATCAGGCCGAGGAGGTGAAGGGTGCCAATCTACGATTCCATGATTGGAAATCTGGGCCAAAGTGGACAAGATACGAGAGCAGATGAACGAGGACCCAACTGGTGGGTTGTTGCCGTTTTCCAGACTGGCGAGTGCTCCCAAGCAGAAAAGCCATCTCTTTTGCACTGAAGATTGTAAGGACAAATCAAAAAGAGCCATTCACCCGGCAGAGGACAAAAGACACCCACGCAAAGCGTACTTTGTGCCATCCAGATAAAGGTCTGTGGAAATGGCAGAGCCCGACTGGCATTCACACAGTGACAAGAGGGCGAAAGGTGTGAAAGAAGCCATTGAGGAGCATCTCCCACCGCTGAATGGAGGGATAAGGGTCTTCAGCGGGAATGAAAGTAGCAGAGCACAGGGCTCCGACATgtcattggaaatgaatgaagAAAACGATCTTTGCATGCAGACAAGGTTAGCGAACAGGACAGGCCAGGACGGGACAGTACCAGATCCGGATATTCCTCCTTGGATTATGAGATGAAACACCTTGATATGGAGAGCAATATTAGCGCACCATCTGGATGGAGATAAGATCACCAGATGGAGATGGCTTGACCGGAGTGAAGTATACTGGGAAACAGAAACACAGATGCAGGAGAGATGCAGATACTGGAGATCACAAGAAATGAGAAAGATCAACCCTCTTTTATCTTGTTCCTCGGCATCGCATTGTGATTTTCGTTATTTCATCAACGGATTGCTTATCTCTTTTCTTAAGATgtcttttattgtttttccctggagctctttttttctgaggtggtgaTGTAGCTGAGATCCAGTCTTGACTTGACAGAAAAAGTATGCTCTTCACATTAATGATTGATTCATAAAACGGTCCTCTGATGATAAGCTCCTGGAGTCACATCATCATCTGCCCGCTTATAACATATAGCATTTCAAAGCATGTTATAGTTTTGTACTTAAAAAGCGTGTGTGTAGAGGAGTCATTTCAAAGAACCCAAGCTTACATTGCTGATTCCATAATGTTGTTTAAGACGGTGTGTGAATTATGTATTGACTGGATCAGGAGGATTCcatattgttcatgttagtttgtATTATACATACAGTATGGATGCTTTGGTGAAccaattgtttttcattttaacgCAACTACATCTGATTTATTAATCAAACGTATGGATTTTGATGGATATTGAGTGTTTGCTGTTCTACAATAACCTCGGATTGGATTTTTCAGCTAATGTGTGATTCTCAAAGACGATCTACTgtactttttatataaaacagaCATTGACAAGTTTGCATTCCTGCACCAATAAATAGATGACCACGAAAGATTGCACTTATTTCACTGTTAAACTCCCATGTGCGAGCATAGGTGGTTATTAATTACAAATAAGCCATGTGTCTAATTTTGCTTCCCTTTTAAGTTATTTGTGAATACAGACACCTATTTTtactataaatgttttatttcgcTTTACTTTTTGGCTGTTTGTAGATACAGATGCTTGTTTTTGcaataaatgtcttattttattttacttttaatatatttgtagATACAGACCaccccctttttttctttttctttttttttttttttacaagaaatgtgttttatttcgcTTTAATTTTAGGCTATCCATAGATACAGAGATGTTTTTACAAGAAAAGTGTTATATTTTGctttacttttcatttatttgtagaTACAGATGcctgtttttacaataaatgtgtcttattttgctttacttttaggctattcttagatgtagatgacaattttttttacaaggaatgtgttttattttgctttacttCTAG

Function

GO:

id name namespace
GO:0070279 vitamin B6 binding molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko02010 ABC transporters
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039585 lncRNA downstream 35537 12495708 ~ 12545977 (-) False XLOC_019428
TCONS_00039584 lncRNA downstream 35537 12495708 ~ 12545977 (-) False XLOC_019428
TCONS_00038314 lncRNA downstream 54398 12518559 ~ 12527116 (-) True XLOC_019428
TCONS_00039583 lncRNA downstream 62550 12495708 ~ 12518964 (-) False XLOC_019428
TCONS_00039231 lncRNA downstream 67821 12502578 ~ 12513693 (-) False XLOC_019428
TCONS_00039234 lncRNA upstream 214420 12975918 ~ 12980878 (-) True XLOC_019432
TCONS_00038320 lncRNA upstream 294388 13055886 ~ 13061774 (-) False XLOC_019434
TCONS_00038319 lncRNA upstream 294388 13055886 ~ 13061774 (-) True XLOC_019434
TCONS_00038325 lncRNA upstream 337440 13098938 ~ 13123124 (-) True XLOC_019436
TCONS_00039594 lncRNA upstream 522902 13284400 ~ 13287747 (-) False XLOC_019439
TCONS_00038309 mRNA downstream 308971 12079897 ~ 12272543 (-) False XLOC_019424
TCONS_00038310 mRNA downstream 308971 12271978 ~ 12272543 (-) True XLOC_019424
TCONS_00038308 mRNA downstream 461803 12079878 ~ 12119711 (-) False XLOC_019424
TCONS_00038304 mRNA downstream 545380 12023796 ~ 12036134 (-) False XLOC_019423
TCONS_00038317 mRNA upstream 283890 13045388 ~ 13051613 (-) False XLOC_019433
TCONS_00038318 mRNA upstream 287816 13049314 ~ 13055195 (-) True XLOC_019433
TCONS_00038321 mRNA upstream 305207 13066705 ~ 13085242 (-) True XLOC_019435
TCONS_00038322 mRNA upstream 331638 13093136 ~ 13123185 (-) False XLOC_019436
TCONS_00038323 mRNA upstream 332043 13093541 ~ 13123176 (-) False XLOC_019436
TCONS_00038313 other downstream 68792 12512607 ~ 12512722 (-) True XLOC_019429
TCONS_00038307 other downstream 545380 12027968 ~ 12036134 (-) True XLOC_019423
TCONS_00038306 other downstream 545440 12027968 ~ 12036074 (-) False XLOC_019423
TCONS_00038297 other downstream 616828 11959300 ~ 11964686 (-) False XLOC_019420
TCONS_00038324 other upstream 333793 13095291 ~ 13123104 (-) False XLOC_019436
TCONS_00038328 other upstream 456410 13217908 ~ 13225402 (-) False XLOC_019438
TCONS_00038335 other upstream 887129 13648627 ~ 13657072 (-) False XLOC_019441
TCONS_00038337 other upstream 890328 13651826 ~ 13662194 (-) False XLOC_019441
TCONS_00038344 other upstream 1107164 13868662 ~ 13868778 (-) True XLOC_019446

Expression Profile

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