RNA id: TCONS_00039583


Basic Information

Item Value
RNA id TCONS_00039583
length 5170
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_019428
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 12495708 ~ 12545977 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGGCTTGTGTGACCTTTGGTCCTGTGCGCTAGAGCCATGTTGGTGAAGCTATACCTGCAAAAATTCATCATGATGAAAATGGGCCCCGTGTGCCCCTAGACTGACGTTGCCTGTGAAGAAGTGGACCGTTCAGAGTTTCTTTGAAGTCTCCACATTTTGGAAAGCAGCAGTTCTCACTTGGTTTTGCTTCACAACCCTTGTACGTATGATGTCAAGCGCTGACCAGATGATCTAGATGACAAGTGCCATACCATCCTGTGAGATGTGCCAAGACAGAATGAGCATCTGTCAAAACACGTCGGTCCCAGCGGACGCTTCGCTGATGGACGCAGACATGCAGGAGAGAAAAAGATAGacggaaagagagagagagagagacggacaGGAGAACGGCTGAAAAGAGATGATTTGGTTGGGTGGGGTCTGGTCTTCACCTGCTGCGCCCACCAGCATCCTTGAACCTGCTTCACCTCCATCACTGCGAGGGGTCGACACAAAGGTCTCCACACTGTGccttcctctctctctcgctctattTTGATTGTGCGTGGTTACAAGCATACTAATGAACTCCACAATAGAGCCAGAACAAGAGACGAGAAATGGAAATGAACGCTGCTGCGGCTGCTGAAAAtacaattagttaaaaaaaaaacaacacatttgatTTCTCTTTGCAGTCCAATGCATCTAGGTATTTGAATTGCAAAGGACTATTGAATATTGCTTGCGCAAACGCAATAACAGTGCAAACAAACGCAGTCCCTAAGCCGGTTTTGCACTGTTCTTGCTTAACTTGAATTGGTTTCAACTGGTACGCTAGCTTTTATTTAAAGACACACCAGTGGAAGTGGCCTAATGGGCTTCTTGCAGTTGTTCTTGAATTGTTGGAAGTAACAACTTTGCCTTAAAGGCACATTTCATTTTTGTCACTAGATGGTGGATATTCACAACGTAACAACTttgtcttaaaggcacagtatgtaattttcaccactagagggtgagtattcacaacaaacaaatgtgtaGTTTGATGACGATGTGACTGAGtgtgggagttgtggtcttcgtTACATCCTACAGGACTCCTCAGATATCATGTTTGCTTATGAGTCAAAGTATTCAAAACTTATTATCATGGTAATATAAAGCACAATGAGGCTCTTATTTGAAGACAGACCAGTGGAAGCGGCCTAACGGGATTTTTGCGGCTGTTCTCAAATTGTTTGAAGTAACAAAAttgtcttaaaggcacagtatgtcattttcCCCACTAGATGGAGcaaattcacaacaaacaaatgtgtgGATTGATGACgctgtgactgagtgtggaatcatgagaGTTGTGGTCTTCTTTACATCCTTCAGCACTCCTCAGATTTATGTTTGTTCATGAGCTAAAGTGTTCAAAACTTATTATCATGGTAGCATGAAGCACAGTGAGGCTCTTATTTGAAGACACACCAGTGGAAGTAGCCAAATGGGATTCCTGCAGTTGTTCTTGAATTATTTGAAGTAACAACATTGTcctaaaggcacagtatgtcattttcCCCACTAGAGGGAGCAAATTCACCACAAACAAATGTGTAGTTTGATGGCgctgtgactgagtgtggaatcctgggagttgtggtcttcattacatTCTACAGGACTCCTCAGATATCATGTTAATTGATGAGCTAAAGTACTCAAAACTGATTATCATGGTAGCATGAAGCACAGTGAAGCTTTTATTTGAAGACAAACCAGTAGAAGAGGCCTAATGGGAGCTTTGTCTTAAAAACACAGTATGTCATTTTCCCCACTAGAGGGagcgtattcacaacaaacaaatgtgtgATTTGATGACgctgtgactgagtgtggaatcatgggagttgtggtcttcgtTACATACGGGACTCCTCAGATATCAGGTTTATTGATAAGCTAAAGTATTTAAAACTTGTTATCATGTTTTTAATGCAagattttataattgtactgtttGATTCAGAGGAAGAAAATGAGAACTGCTGATACATTGGAACAATTGATTTCTTACTGATTCTTTATATTTGATACTAAAACTATCTGACTAATATACATCagagtaatgctgtgttcacaccacatGCAGAAGAAGCCTCAATctcgagtgatttacatgttaagtcaatgcaaacgcgcaaatAGACACGCCACGTTAGCCAATCAGGAGATTACTCTTGTGGGGCTGTGATAATGACTctgcgcctgttgttggtgtcccggggggaaatcctcctgcacacaccgacaacagttctTCAAACTGGGCTcgactcagtcagaagcaccgctgaatgcttccatcatccaggttaagtttctggaggagtttaggAGCTTACAGAGcagggtgcacctctgaaaggatctagtggactcagacactgctccaaaTGAATTGATGCTGTTTTTTAGCCTTGATAAAACCCTattaaatccatgttagccatttagcaacgaagctacagtcaccgggcagacagaagccctgcccatgacgcgaatccgcatctgttctgaagtgagTTTGGCGCacaaatgaagcagatttgacacgtgaatgaagtgagtaaatTCAAATTTTAATGAGTCTATTTATGCgcaaatagcgcaatttatccatGCATTCCGCGTCACAGCATTAAACTAAAAAACGTTTTGTCATGGCGGTTTAAAGCACGTTAAGACTGAAGGCCGTTGAAGCAAAAGACCACTGAAGTAACTGCTCATAAGAGATGAGTGAGACGTGACATTAAAGCAggagagcttttattatgccacagttcTTTCAGTTTTCACACTGATTATTATGGGGAAAAGCAGCACTGTTTTatcataataaatacatttaaggtTCAGCtaaaatgctgctctgtgtggtCGAATAAATGCACAACATGCTGCGTCCTAATTAGCATACTTGTACTACATAGGTATGCGACACATATAAAACACATTTGTGATGAAAAATtccatacttttgagtgtgtaacagaagagcaGGCAAACTTTGGCATATACTACTACTCAGTAATGGAccgttatgttgcttagttacatcccctgtcaatcatctcgacacatcatcaacatttcttttatatttgcttaactatgcagcagcaggttaatcttcCATTCACGAGTcgttcatgcagagaaatctcctcaggtctttggataattatgcattcagaaggTTATGTCCAAAAaggactttatatatatatatataagttcacATTGTTATTGCAGATGAAACATAACATGGACTacaagatttaaatattttccagttggctatttacatacctgtcaacattgggatgtaaaaataagggatatgcaaCCATAATAAGCGtgtcaaatcgcgtgtacagaatccgtttgggaaacagcgtctatttatcactatggagcgcgtcagctgacagtcatgcaccattatatgacttttgaggattgtataggatgggcgatggcacctgtaatcaaagGAAAATGCAATCacgccgtttttaatatttatttataagtgttttcattcctaaacaaagtgaaagcacagaagactcatgTTTTAGAGCAAGGGGTGACCCCTGGTGGCTCGgctgtatgggttgcgtatagggaggctcggctgttcagagatAGACTGAAAAttcgggagaaatacgggaaaatacctttacgggatgacagcgggatagaacagtaaaatatgggagaatcccaggaaaaacgggagggttgacaggtatgtatttatgaattaattcaaacaactttacagaagcctctctacttgatggTTAGTCTTGCGCGTCCACCATGTTTGTGGTTTCTTTACACTTTTCACCagagtttgtagttctaatctaATTCAAGTCTAACACACAATGTATTGTGGGAAATATTAGCGGTTAGAGTACAGACGattctacattttaaatttctAACGGAAATAATACAGCACCTGgaaacctttggcatactcttttcaacatactacggtTTAGGATACACTAATGCTATCATTGAacactatttaggatggatagcatgaaaattgggatgcagcaataTTGAAACTGTTGTTTTTTGCCCGTTTTCTTTTAAAACCTGGAAAATAGAAATTGATCGTGTAATTAGCATGGCGACACATGATACAATCAGTGTTACTaattaaaatagcttatttttctgcatttgaacattctttaaaacatttgtacaaaagtcagcaaaatatatgaCACAGTTCTACTGgtttatggatttttttaatatattttaacctCTGCAAAAACAGACCAGTAGCACATTAATACTGTAACTCATTAATGCACACATCTCATCAGAATCTAAAACCCCTACTAGTAGTTTTGTAATGTCATTTCTCTTTACACTCTCTAAGAACAAGAGAAAAATCAGTAGCTTTAGTTCCAAATTATGTTTGCACTTTATTAATGAACTGAAATGACTCTTAAAGTGGCATGTTGGCACAGCATCAGCATTTTAGAAAAGGTAAATCTGCATTTGCTAATGCATAGTTTGCGCTGTGTGTTTCCTTTACATGTGCTGACTCTGTTCCTGGCGGCCACAGGCAACTCAGGGTAAATTCAGTGGGAGATCTCCTGAAAATACAAAGTTACATTACCAATGCAAACACCAAGTACAGCACACCACGCCGGAAGCAATAATTACACCCCCAGACACTCGGCAGCCTCACTAACGTTCCCAGAATTATCCAAGAACGTTGTTTATTTGCAAAATGACCctgtaaatcattcatccattcattaaatTTTAGGTTATTTACAGATTAACAGATAAATGTTTCAACATCTGGAAGCAACATGCGTCCCCTGATGCCGTGCCCTTTACAAGAGTTTTGTTAGAAGGCATTTTAGGTTACTCATTACATTACAGTATTATTGTGTCAATGCATCCTTGTTTTACTGCTGTTCCATGTTATTTATTTCAAGAAAGTTACATgttaattacatatttaatgaTGTACAGTATGTGCCACCCCTGCTGTCTTTAGAGTTCATTTATGCACAGCAATCAGGGCTTGAcaataacttttttgatcaccagccacagtggctggtagttttcca

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038312 lncRNA downstream 13472 12475055 ~ 12482236 (-) True XLOC_019427
TCONS_00039579 lncRNA downstream 13539 12448945 ~ 12482169 (-) False XLOC_019427
TCONS_00039580 lncRNA downstream 13539 12455057 ~ 12482169 (-) False XLOC_019427
TCONS_00038311 lncRNA downstream 60646 12355585 ~ 12435062 (-) False XLOC_019426
TCONS_00039586 lncRNA upstream 62550 12581514 ~ 12761498 (-) False XLOC_019430
TCONS_00038315 lncRNA upstream 65792 12584756 ~ 12607941 (-) False XLOC_019430
TCONS_00039587 lncRNA upstream 69737 12588701 ~ 12598420 (-) False XLOC_019430
TCONS_00039588 lncRNA upstream 69737 12588701 ~ 12598511 (-) False XLOC_019430
TCONS_00039589 lncRNA upstream 69737 12588701 ~ 12603650 (-) False XLOC_019430
TCONS_00038309 mRNA downstream 223165 12079897 ~ 12272543 (-) False XLOC_019424
TCONS_00038310 mRNA downstream 223165 12271978 ~ 12272543 (-) True XLOC_019424
TCONS_00038308 mRNA downstream 375997 12079878 ~ 12119711 (-) False XLOC_019424
TCONS_00038304 mRNA downstream 459574 12023796 ~ 12036134 (-) False XLOC_019423
TCONS_00038316 mRNA upstream 226467 12745431 ~ 12749501 (-) True XLOC_019431
TCONS_00038317 mRNA upstream 526424 13045388 ~ 13051613 (-) False XLOC_019433
TCONS_00038318 mRNA upstream 530350 13049314 ~ 13055195 (-) True XLOC_019433
TCONS_00038321 mRNA upstream 547741 13066705 ~ 13085242 (-) True XLOC_019435
TCONS_00038322 mRNA upstream 574172 13093136 ~ 13123185 (-) False XLOC_019436
TCONS_00038307 other downstream 459574 12027968 ~ 12036134 (-) True XLOC_019423
TCONS_00038306 other downstream 459634 12027968 ~ 12036074 (-) False XLOC_019423
TCONS_00038296 other downstream 525521 11959298 ~ 11970187 (-) False XLOC_019420
TCONS_00038324 other upstream 576327 13095291 ~ 13123104 (-) False XLOC_019436
TCONS_00038328 other upstream 698944 13217908 ~ 13225402 (-) False XLOC_019438
TCONS_00038335 other upstream 1129663 13648627 ~ 13657072 (-) False XLOC_019441
TCONS_00038337 other upstream 1132862 13651826 ~ 13662194 (-) False XLOC_019441
TCONS_00038344 other upstream 1349698 13868662 ~ 13868778 (-) True XLOC_019446

Expression Profile

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