Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00038938 |
| length | 1787 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 2 |
| gene id | XLOC_019783 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007132.7 |
| NCBI id | CM002905.2 |
| chromosome length | 45934066 |
| location | 38659302 ~ 38717854 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048511 | rhythmic process | biological_process |
| GO:0042752 | regulation of circadian rhythm | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0007093 | mitotic cell cycle checkpoint | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0031624 | ubiquitin conjugating enzyme binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030922-1 | Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and regulation of circadian rhythm. Predicted to act upstream of or within rhythmic process. Predicted to be active in cytoplasm. Is expressed in dorsal aorta; gut; male organism; nervous system; and otic vesicle. Orthologous to human SIAH2 (siah E3 ubiquitin protein ligase 2). |
| ensembl_id | ENSDART00000065169 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00039684 | lncRNA | downstream | 26395 | 38629308 ~ 38632907 (-) | True | XLOC_019782 |
| TCONS_00038937 | lncRNA | downstream | 40634 | 38605393 ~ 38618668 (-) | True | XLOC_019781 |
| TCONS_00038931 | lncRNA | downstream | 196156 | 38457283 ~ 38463146 (-) | True | XLOC_019779 |
| TCONS_00039256 | lncRNA | downstream | 201168 | 38457283 ~ 38458134 (-) | False | XLOC_019779 |
| TCONS_00038925 | lncRNA | downstream | 688147 | 37968040 ~ 37971155 (-) | False | XLOC_019775 |
| TCONS_00038942 | lncRNA | upstream | 8348 | 38726202 ~ 38730597 (-) | False | XLOC_019784 |
| TCONS_00039685 | lncRNA | upstream | 9245 | 38727099 ~ 38730597 (-) | False | XLOC_019784 |
| TCONS_00038944 | lncRNA | upstream | 10303 | 38728157 ~ 38730563 (-) | False | XLOC_019784 |
| TCONS_00038945 | lncRNA | upstream | 11013 | 38728867 ~ 38730597 (-) | True | XLOC_019784 |
| TCONS_00038950 | lncRNA | upstream | 329122 | 39046976 ~ 39058481 (-) | True | XLOC_019787 |
| TCONS_00038935 | mRNA | downstream | 39997 | 38585686 ~ 38619305 (-) | False | XLOC_019781 |
| TCONS_00038936 | mRNA | downstream | 40762 | 38589725 ~ 38618540 (-) | False | XLOC_019781 |
| TCONS_00038932 | mRNA | downstream | 77241 | 38509465 ~ 38582061 (-) | False | XLOC_019780 |
| TCONS_00038934 | mRNA | downstream | 77241 | 38518774 ~ 38582061 (-) | True | XLOC_019780 |
| TCONS_00038933 | mRNA | downstream | 77399 | 38511085 ~ 38581903 (-) | False | XLOC_019780 |
| TCONS_00038940 | mRNA | upstream | 6192 | 38724046 ~ 38730641 (-) | False | XLOC_019784 |
| TCONS_00038941 | mRNA | upstream | 6196 | 38724050 ~ 38730557 (-) | False | XLOC_019784 |
| TCONS_00038946 | mRNA | upstream | 131997 | 38849851 ~ 38853737 (-) | False | XLOC_019785 |
| TCONS_00038947 | mRNA | upstream | 132027 | 38849881 ~ 38852860 (-) | True | XLOC_019785 |
| TCONS_00038948 | mRNA | upstream | 288051 | 39005905 ~ 39024754 (-) | True | XLOC_019786 |
| TCONS_00038929 | other | downstream | 595988 | 38063197 ~ 38063314 (-) | True | XLOC_019777 |
| TCONS_00038902 | other | downstream | 1586222 | 37072951 ~ 37073080 (-) | True | XLOC_019765 |
| TCONS_00038875 | other | downstream | 4122928 | 34430460 ~ 34536374 (-) | True | XLOC_019748 |
| TCONS_00038861 | other | downstream | 5522219 | 33136948 ~ 33137083 (-) | True | XLOC_019739 |
| TCONS_00038828 | other | downstream | 6577153 | 32076707 ~ 32082149 (-) | True | XLOC_019725 |
| TCONS_00038943 | other | upstream | 9245 | 38727099 ~ 38730018 (-) | False | XLOC_019784 |
| TCONS_00038955 | other | upstream | 549371 | 39267225 ~ 39267306 (-) | True | XLOC_019791 |
| TCONS_00038972 | other | upstream | 1360097 | 40077951 ~ 40081929 (-) | True | XLOC_019807 |
| TCONS_00038990 | other | upstream | 1685406 | 40403260 ~ 40411647 (-) | True | XLOC_019813 |
| TCONS_00039012 | other | upstream | 2533577 | 41251431 ~ 41251548 (-) | True | XLOC_019825 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000040_06377128_06414371.mRNA | True | 837 | mRNA | 0.56 | 2 | CI01000040 | 6377128 ~ 6414371 (+) |
