RNA id: TCONS_00038933


Basic Information

Item Value
RNA id TCONS_00038933
length 4738
RNA type mRNA
GC content 0.36
exon number 13
gene id XLOC_019780
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 38509465 ~ 38582061 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACAACTTTACCGGAGAGACGTCAGGAGTAGTCGGGCAGCGGCGCACCGGGGCTTCGCGAACTTCACAACAACAACTGAATGTTATTTCTCGTTCAAACTTCATACAACTCGCAGAAATGACTCTTCCTTACGGCCAAAGCGTGACCACCCTGAGGACCGTGACCGTCGCGGAACCGAGCAAGCAGACCGTCCTGACGTCTCCCGTCGGGTTAAGCGAAGGTTCGACGACTTACCGGACGGTGAATCTCTCGGGAGCTCAGTATCAGCCAGTCCAGTACATGAACAGTCAGGTGGAGGGCAACTTTATGTACGGGGGCGCTCGGTACCTGGTGCCCGTCCAGCAGCAGCCCGCCGAGTCCTATGTGTACGTGCGTCAGGCGCCGCGCGTCGTACAGCCGGTTTACTTACAGAACGTTCAGCCGGTGAGCCTCAGCAGCGTCGACGAGACCGACGTCAGACAGGTGAACATAAATGGACAAACAACAGTCTTCAGCCAGTTATCCAGTCCAGTCAAGAGTCCTGAACCATCTGAGTCGGAGTTGGTGGAAACTTCAAGCATTCACGAGGAAGTCCTGGACCTGAAGCAACTGAAGAATGGCATCTCCACTGAGATTAAGACCGAAATACAGGAGCCTGTCGCCAAACTGGACAACCGTTTCTTTGGCGAACTCCTTGCCGAAGTTTACCGGAAGAACGTCGATATTCAAACTTGCATTTCTGAGCATGTGGCCAAGATCCGAGGAAGGAAACACCTTCTAGACTCCACCATTGACTACAAGatggAGAAAGAGGAATTTGAGAGTCTCATACCTAAAGGAGTGTCTGAACTGACTAAACAGCAGATCCGCTACCTTCTGCAGACTCGTATGACAGCTGATAAGACAATGCATCTGGTGATGACCACATTCAGCAGTCTTCGAGAGGAGCTAGTGCACATGCAGGAGGACCTGAGGCGTCTGGAGAGCGAGAAGGAGGACCTGGAGAGAGATCTGAACTTTAAAGCAGATCAGGCTCAGCAATATGACAGACTACTGGAGACCGTTCGTGAACAGAACAGACAGCTGCAGATGTCTTTGAAGGAAAGTAACAATGCTCAGCGGACTTTGGAAAGTCAACTGCTGACCTTCCAGAGCAAAGACCCGACTAAAGACTTCCGCATCAAAGAGTTGGAGGGCAGCAAGAGGGCATTGGAGCAGGAGAACGAGCTGCTCAGGAAGAAGTTGGCAGGGCAGTGCAGTAGCTCCACCATCCAGATCAAAACACAAGAGCTGTCCAGAGAGTACGAGAAGATGCTGAATGATCTACGAGAGGAGAAAGACAAAGAACTCAAGAGCCTGCGGtctcagCTTATAAAGATTCAGTCAGAGAGCACCATAATACAGACCACCGACACCAGCAGTCTGGAGCTGCGTATCTCTGAGCTTCTGTCCAAACTGGAGCAGCGTGAAAGCGTCATCAGACACCAGGAAGAGGAGATCAGACGACTCAAACTGCAGAAGACCGACAGCTCCAGCAGCTCCACGAGGACCGTCGTTACCAAGAGATACATGAACCAATACCCTATTTTGGGTCTGCTGAGTGACGATTATCAGTACACTGCTCCTATAAAAGAGGACAGGACTATGGTCATCGAGAGGACAGGAGAGGTCAAGACTCGCATTATCTAGAGTGTGAATTTAAAGGATAATCTTGAGGCTTCCTTGTTTTCCCGTCCTGACTTCCTCTGCATGCAGCCATCGTCTGCTTCCAGTGCCTCCTATTGGTGGTGGTGACTTTTATCATTTTTAGGCTTTGGAATTGAATAACACATGAAATTTGAAGCAGTACACTTTATGACACAGCTGATGCTATATTTTTTCATAAGATCTTTCTTTATTGCGATGTAACGTGACTACTgatagttatttttatatttttttgtgctgTCTCTTCATATGATGCGCCACAACCTTTGGCAGACATAAACACTACTGTAAGCATGTGCATATTTGGAGAGAAATTATTTACTGGTATCATATACAGTGCCTTAACTGGAAAAAATTAAGCATCGTTCGTAATGTAAAAGGTGACTTTTGGATTTCTTATTCATTTGGGTATATTAATTATGGaagtatgttgttgttgttatgataATGTCAAAGGTGATACTTTATACACTTTAAAAAGCTATAGATTAATGTAATAGGGGTTGACCACCCATTATGGTTTTTCAATGGCAAATGTTTGGGTTCAGTAAgattttttgatgtttttgaaatgtttatttgataaaaaataatatttaaaatattttggcatttgttatattattaactTTCTGTctcaatcaattatttatttctgttatgtAAAGTCATTACTTCATTTCTCAGCGTCATAGAAGTTTCTAATATGATGATTTGGTTGTCAAGAAACATATAGTAGTGTGAATCAAATTATTCACTAAAATGAATTACTTTTGATCAGTGTAATGCATTGTCTCAGGTATGAAAAAAATCTTACTAAACTTAAACTTTTCAAAGGTAATAAGGAATCATTATGGAAAACCCTTTTCCcccacagaataaaaaaaacacatagcaTCTCTATCTTAGAATACTAACTTTTtgttgcaattctgagtttatgTCTCACAAAATGActttttcctcaaacagtttaaataataaacatctgaattgtgaaataataataatacaaatcttCAATCATTATTAGTTTTATCTGACAATTCAGACTTTTGCTCTCCGAATTAATAATGAATGTATTTGCAGTTGACTTTATTTCTTGAGATTGCAAGTTTATAGATTATTGACTCATACTACTTGCATCTTACTAACTTGCATTTCAGAAGTCttctcggtaacactttataataactacactctATAAATCCTTCACTAAgcgtgaattcattatttgttaagcattaactttacattaataaacgtCAGTAAAcggtttataactgcagctacaaatgctgtattcttgacttataagcacctatataatgtatttaataattgtactttcatactttgtaaatgatttatatttcattactaaataaattatttcattatttacaaaccatctgtatttaagagtagttgagggtttttaggatcattcagaatgagttagtaaattattaataaactactgaaatcaacatttatacatcttattattcaggcatatactaatagttaactaatatgttaataaatgctttataaacttaacttcatgcagttttgtgacctaatctaaagtgagggctatttatgctttataaatcccttataaatgactattaaaggctcagaatcaaatgaacaataatctttgcaatcttatctaaaaagtaaaattactgtaaagtttaaacattgctgaataacagtagtgtcaaaatacaacataaaattggataaaacaacaacaacaatataataatttaacaatataataagatgcaatgattaaactctacagtgattttatgtTAGATACgtttgcaaagatttatttttcatttgaagtacagtttcatttgtgtatcttttaatgaatagaaatgaataatttcatttttcttgtttagaatttaacagagcctttatttgtcatttaaaagaggtttaagcataaatagtcctcactttagattaggtcacaaaactagatgaagttgagttaataaagcatttgttaacatacatagtaaccattaatgtatgcctgaataataagacataaacgttgatttcaatagtttattaatcatttactaactcattctgaatgatcccaAAAATCctaaactactcttaaatacaaatggtttgtatatatatatatatatatatatatatatatatatatatatatatatatatatataatataatgcaatacttcatttagtaatgaaaaataaatcattaactaagtatgaaagtacagttattaagcacattataaatgtggttataagtcaagaatacagaatttgtagctgcagttattaACTGCTTaataacgcttattaatgtagagtaatgcttaacagataatgaattcactatttgctaatgcttaatagatgatttatagtgtgtagtgtagtgttattataaagtgttaccacattcTCTAAAAATTTGCAGTTGCATAAGTCTAAACGGCAATATACAAATTTACAATTCTGAGAAAAAGGCAGAACTGTGATCATTCATTCTGAGGggatttgcattcattcattttcttttcggcttcgtccctttattaatccggggtcgccacagcggaatgaactgcctggGGATTTGTGTCTTGTCATAATTGTctttttatttctcacaattctgcctttttttcttgcattttttaacatttaccaATTCTTATGTTCCCTAAATTTAGTTTCCTTCAAAATCATGAGTAGTGGCCAAAAGTGATTTCCAGCAAAGGAAACTTTTGTTTATGATCTGCATTTCAGCATTTTCAGCTGTTATGATCAAGGAAACAtgctattaataaaatacaagagggaaataaaaaaaaaatgaataactgattAAAGCCACTCCATTTCTTTCTGTACACGCCattgctttcttttctttttttaaaaatacatttttagcatAGTCAAACAAAACCCTTATTCTTTCATAATATATTGTTTGCCTTTTTTGCCCATTAAATACCAAGCAAAATTTGTCATA

Function

GO: NA

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-030131-4287 Human ortholog(s) of this gene implicated in primary ovarian insufficiency 2B. Orthologous to human POF1B (POF1B actin binding protein).

Ensembl:

ensembl_id ENSDART00000148939

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038931 lncRNA downstream 47939 38457283 ~ 38463146 (-) True XLOC_019779
TCONS_00039256 lncRNA downstream 52951 38457283 ~ 38458134 (-) False XLOC_019779
TCONS_00038925 lncRNA downstream 539930 37968040 ~ 37971155 (-) False XLOC_019775
TCONS_00038913 lncRNA downstream 860769 37644896 ~ 37650316 (-) True XLOC_019770
TCONS_00039683 lncRNA downstream 878452 37621675 ~ 37632633 (-) True XLOC_019769
TCONS_00038937 lncRNA upstream 23490 38605393 ~ 38618668 (-) True XLOC_019781
TCONS_00039684 lncRNA upstream 47405 38629308 ~ 38632907 (-) True XLOC_019782
TCONS_00038942 lncRNA upstream 144299 38726202 ~ 38730597 (-) False XLOC_019784
TCONS_00039685 lncRNA upstream 145196 38727099 ~ 38730597 (-) False XLOC_019784
TCONS_00038944 lncRNA upstream 146254 38728157 ~ 38730563 (-) False XLOC_019784
TCONS_00038930 mRNA downstream 357261 38128877 ~ 38153824 (-) True XLOC_019778
TCONS_00038928 mRNA downstream 479947 38013077 ~ 38031138 (-) True XLOC_019776
TCONS_00038927 mRNA downstream 480047 37996822 ~ 38031038 (-) False XLOC_019776
TCONS_00038924 mRNA downstream 537266 37967457 ~ 37973819 (-) False XLOC_019775
TCONS_00038935 mRNA upstream 3783 38585686 ~ 38619305 (-) False XLOC_019781
TCONS_00038936 mRNA upstream 7822 38589725 ~ 38618540 (-) False XLOC_019781
TCONS_00038938 mRNA upstream 77399 38659302 ~ 38717854 (-) False XLOC_019783
TCONS_00038939 mRNA upstream 77401 38659304 ~ 38717854 (-) True XLOC_019783
TCONS_00038940 mRNA upstream 142143 38724046 ~ 38730641 (-) False XLOC_019784
TCONS_00038929 other downstream 447771 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038902 other downstream 1438005 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 3974711 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038861 other downstream 5374002 33136948 ~ 33137083 (-) True XLOC_019739
TCONS_00038828 other downstream 6428936 32076707 ~ 32082149 (-) True XLOC_019725
TCONS_00038943 other upstream 145196 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038955 other upstream 685322 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038972 other upstream 1496048 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038990 other upstream 1821357 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00039012 other upstream 2669528 41251431 ~ 41251548 (-) True XLOC_019825

Expression Profile

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