RNA id: TCONS_00038928


Basic Information

Item Value
RNA id TCONS_00038928
length 2291
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_019776
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 37996822 ~ 38031138 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCGCGAATGAGAGTCTTTGAGTTAAAACTACATTTCCCAAAATCCTCTCCGCCACAGCTTCTTTCCTGTCGGAACGGGAAATAGAGGGAAAGTGTAAACATGAAGCGgGTTACTCGCCATGCCTGTGATGATGTGCCCATCCCTGAAGAACAGGAGACAGAAGGCCAGAGACAACTGCACAATCTGCTGCTGCAACAACTGGACACAGATGTTGACATTGACCGGTGTGTGGCTAAGAAGAAATGCTTTGCTCCAGCTGCGGTGTACAAGCCGTTTGGGGAACAGGCCGCTGGTGTGAGGAGTCTGTCTCAGTTTCAGGCCCTGCAGGACGGAGATCAGGAGCTGGCGGCTCTCAGAGAACTGGGCCTAACTGATGCTGAAATACTGCTGTGGAGGAGCAGGGAGCAGCCGGAGAGCTCCCTCAAGGACAGAGGGGTTTGTGTGGCCCCTGAGGCGAGGAATGAGCGTCTGCAGGCCATCCGGGATAAAATGGCAGCTCATGCGGAGCTGCTGTCCCGACCCCAGCGCTTCTCAAGCAGTCGAGCGCTGTCCCGCAGAGAGATGGAAATCGAGAAAGCTCTTTTTCAAGGCAGCGACCGCTCCAGCTTCCTCACTGCCCTTTACCATCAAGATGGAGATTCACATGTCAGCCAGCAGAGGGCGACATCGCCCAAAACAATGGACCATTTCTACAAAGACTTTCTTGAAGAGCAGAACAAAACATTTGGTGATGTTTCAACGCTTCAGccagaaactgtcactaatatCCAGTGCACATCATCAGACTCTAAAAGTGACCAATCACAAAGTCCAACGGTCTCTGAATCCGGTCTACCTGAATACCAGCACAAGTGCACAAAATCAGATATTGTTAACCAACCACAGCCTCAGGAGAAAAGCATTCAGCCTGTGAAAATCACAGTTAGCCAGTCTGTTGGTAAGCTAAACTCAGCGTTTGTGCAAGGACATAATGGACCCGTTGCGTTGAGTGGAAGGATAAAGGAAGTCTCAGATGAAGAGATCAAGAGCAATCGAGAGACAGAAGAGGCCATAAGGAACATTCCTCGATTTAAGAACTACCAGAGGGGAAAACCATCCAAAgtcCTGTGTGTGAAGAACATCAGTCCACGGGCATCACTTGCGCAGCTGGTTTCTCTGTTTTCACGCTTTCAGAAGGACGAATCGCAGCCCATCCTGTACCGCCTGCTGACCGGACGCCTCAAGGGTCAAGCTTTCATTACACTCGCAGATGCTGAAATCGCCCAAGCGGCTTTGGACTTGTTAAATGGCTACAAGCTTCTGGAAAAGCCTCTGGTTATAGAGTTTGGGAGAGCAAGAAGTAAAGAGACTGATTTACAGACTGATGAAACCTCGGTAGATCCGAACACCCTTTCAGtgcaaaacaacaaacacacataatcataatttaacactgtatttaaaggaatagttcacccaaacattttaatttactcaccctcaagctaTTCTAACTAAGTGTATATGATGTTCTTCTGTCAGATGAACACTCTTAAATGCTGTATATTGGTGTCGgaaatggcttttattttgaagcctTCAAAAGCACATATATCCATCTTGGTCACCtaatgtgtaataaataaatgcatttttcaaacaaaatgtTTCAAATTGTTTAGCTATAAACTCCAATCATTGCTTTTCGgtatactctgtataattactgctTTATATTACAGTGAGGTTTGGGCTTAGGCAGACgttaataaagtacaattaatgggtaatttaataaatgtcatgaataattcttgttaacctCTGGCCACAGCTCTTGTccttatacagtgctcagcatatctgagtacaccccccacacatccctcatttaaattaatattttctattggatgctttacaatattatattggtgcataaacagttaaagtcagaattattagcccccctgaattattagcgcccctgtttattttttccccaatttatgtttaatggagggaagattgtttcagcacatttctaagcataatagttttaaagacctatttctaataactgattaattttatctttgccatgatgacagtaaataatattttacttgatatttttcaagacacttctatacagcttaaagtgacatttaaaggcttgactaggttaataaggtgaactaggcaggttagggtaattaggcaagttattctataacgatggtttgttctgtagactgtcggaaaaaaaatagctcaaaggggctaataattttgtcccaaaaatagtttt

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097157 pre-mRNA intronic binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030626 U12 snRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-107 Predicted to enable U12 snRNA binding activity and pre-mRNA intronic binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex. Orthologous to human RBM41 (RNA binding motif protein 41).

Ensembl:

ensembl_id ENSDART00000076238

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038925 lncRNA downstream 41922 37968040 ~ 37971155 (-) False XLOC_019775
TCONS_00038913 lncRNA downstream 362761 37644896 ~ 37650316 (-) True XLOC_019770
TCONS_00039683 lncRNA downstream 380444 37621675 ~ 37632633 (-) True XLOC_019769
TCONS_00039255 lncRNA downstream 390557 37621343 ~ 37622520 (-) False XLOC_019769
TCONS_00038907 lncRNA downstream 415161 37595791 ~ 37597916 (-) False XLOC_019769
TCONS_00039256 lncRNA upstream 426145 38457283 ~ 38458134 (-) False XLOC_019779
TCONS_00038931 lncRNA upstream 426145 38457283 ~ 38463146 (-) True XLOC_019779
TCONS_00038937 lncRNA upstream 574255 38605393 ~ 38618668 (-) True XLOC_019781
TCONS_00039684 lncRNA upstream 598170 38629308 ~ 38632907 (-) True XLOC_019782
TCONS_00038942 lncRNA upstream 695064 38726202 ~ 38730597 (-) False XLOC_019784
TCONS_00038924 mRNA downstream 39258 37967457 ~ 37973819 (-) False XLOC_019775
TCONS_00038926 mRNA downstream 39996 37970344 ~ 37973081 (-) True XLOC_019775
TCONS_00038923 mRNA downstream 40665 37966933 ~ 37972412 (-) False XLOC_019775
TCONS_00038921 mRNA downstream 49936 37941347 ~ 37963141 (-) False XLOC_019774
TCONS_00038922 mRNA downstream 61258 37948422 ~ 37951819 (-) True XLOC_019774
TCONS_00038930 mRNA upstream 97739 38128877 ~ 38153824 (-) True XLOC_019778
TCONS_00038932 mRNA upstream 478327 38509465 ~ 38582061 (-) False XLOC_019780
TCONS_00038933 mRNA upstream 479947 38511085 ~ 38581903 (-) False XLOC_019780
TCONS_00038934 mRNA upstream 487636 38518774 ~ 38582061 (-) True XLOC_019780
TCONS_00038935 mRNA upstream 554548 38585686 ~ 38619305 (-) False XLOC_019781
TCONS_00038902 other downstream 939997 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 3476703 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038861 other downstream 4875994 33136948 ~ 33137083 (-) True XLOC_019739
TCONS_00038828 other downstream 5930928 32076707 ~ 32082149 (-) True XLOC_019725
TCONS_00038827 other downstream 5931699 32073529 ~ 32081378 (-) False XLOC_019725
TCONS_00038929 other upstream 32059 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038943 other upstream 695961 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038955 other upstream 1236087 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038972 other upstream 2046813 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038990 other upstream 2372122 40403260 ~ 40411647 (-) True XLOC_019813

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000040_06787406_06804047.mRNA True 1361 mRNA 0.47 6 CI01000040 6787406 ~ 6804084 (+)