RNA id: TCONS_00038922


Basic Information

Item Value
RNA id TCONS_00038922
length 708
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_019774
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 37941347 ~ 37963141 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTCAGCGTTTCTAGATGGCAAGGATGCAAACTCTCTTCTTAAACGTTTTCGGCGGGCAAACGGTTTCTTGGAGGAGTTCCGGCAGGGCAACATCGAGAGGGAGTGTGCTGAGGAGAGCTGCAGTTTTGAGGAGGCCAATGAAGTATTTGAAAACAAGGAACAAACGATGGAGTTCTGGAAAAACCGCAGCATCTACACAGTGAATAGCAATGCCGATTCAAACTCCGAGCGGCTGGACTTTGGGAACATGGTGGTGCCCCTGGTGGGCGTGGCTGTCATTATCATCGCGCTCTTCATCATCTGGCGGCTGTCCATCACTCGCTGGCGTCTGGCCTACACCCAGAACCGCTATCTGGCAAACCGGAACACCCGCAGCCTCCCTCGCATCCTGGTGCACCGCGACCCACTCTCACATTCAGAGAACTTCCACGCCAATGACAGGCTCAGTGTGGTGGTCAGCGGCACCGAGCGGAATGGGTCTTCTCTCGCCACCCAAGACGCTCGCCATCACACCGGCCACTCACAGAACAATCGCTCGCTATATGTTCAAGATCCATCTTTATCTGTGGCCTCCCAGTTGTCTGGGGCGACCCCGCCACCATCCTACGAGGAAGTCACAGGGCATTTAGAAAGCAGCAGCGATGAGACGACAGTTCCATACAATGATCCTCCACCAAAATATGAGGAGATTGTGCTAGAAAAGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000139549

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038913 lncRNA downstream 298106 37644896 ~ 37650316 (-) True XLOC_019770
TCONS_00039683 lncRNA downstream 315789 37621675 ~ 37632633 (-) True XLOC_019769
TCONS_00039255 lncRNA downstream 325902 37621343 ~ 37622520 (-) False XLOC_019769
TCONS_00038908 lncRNA downstream 350506 37595791 ~ 37597916 (-) False XLOC_019769
TCONS_00038925 lncRNA upstream 16221 37968040 ~ 37971155 (-) False XLOC_019775
TCONS_00039256 lncRNA upstream 505464 38457283 ~ 38458134 (-) False XLOC_019779
TCONS_00038931 lncRNA upstream 505464 38457283 ~ 38463146 (-) True XLOC_019779
TCONS_00038937 lncRNA upstream 653574 38605393 ~ 38618668 (-) True XLOC_019781
TCONS_00039684 lncRNA upstream 677489 38629308 ~ 38632907 (-) True XLOC_019782
TCONS_00038920 mRNA downstream 14589 37915193 ~ 37933833 (-) False XLOC_019773
TCONS_00038919 mRNA downstream 14589 37915193 ~ 37933833 (-) True XLOC_019773
TCONS_00038918 mRNA downstream 58695 37787805 ~ 37889727 (-) False XLOC_019772
TCONS_00038917 mRNA downstream 58695 37787805 ~ 37889727 (-) True XLOC_019772
TCONS_00038916 mRNA downstream 157695 37787805 ~ 37790727 (-) False XLOC_019772
TCONS_00038923 mRNA upstream 15114 37966933 ~ 37972412 (-) False XLOC_019775
TCONS_00038924 mRNA upstream 15638 37967457 ~ 37973819 (-) False XLOC_019775
TCONS_00038926 mRNA upstream 18525 37970344 ~ 37973081 (-) True XLOC_019775
TCONS_00038927 mRNA upstream 45003 37996822 ~ 38031038 (-) False XLOC_019776
TCONS_00038928 mRNA upstream 61258 38013077 ~ 38031138 (-) True XLOC_019776
TCONS_00038902 other downstream 875342 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 3412048 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038861 other downstream 4811339 33136948 ~ 33137083 (-) True XLOC_019739
TCONS_00038828 other downstream 5866273 32076707 ~ 32082149 (-) True XLOC_019725
TCONS_00038827 other downstream 5867044 32073529 ~ 32081378 (-) False XLOC_019725
TCONS_00038929 other upstream 111378 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038943 other upstream 775280 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038955 other upstream 1315406 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038972 other upstream 2126132 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038990 other upstream 2451441 40403260 ~ 40411647 (-) True XLOC_019813

Expression Profile

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