Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00038923 |
| length | 1374 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 4 |
| gene id | XLOC_019775 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007132.7 |
| NCBI id | CM002905.2 |
| chromosome length | 45934066 |
| location | 37966933 ~ 37973819 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001756 | somitogenesis | biological_process |
| GO:0001757 | somite specification | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0048641 | regulation of skeletal muscle tissue development | biological_process |
| GO:0032525 | somite rostral/caudal axis specification | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060113-1 | Involved in negative regulation of transcription, DNA-templated and somite rostral/caudal axis specification. Acts upstream of or within regulation of skeletal muscle tissue development and somite specification. Located in nucleus. Is expressed in several structures, including margin; paraxial mesoderm; presumptive paraxial mesoderm; shield; and somite. Orthologous to human RIPPLY1 (ripply transcriptional repressor 1). |
| ensembl_id | ENSDART00000186315 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00038913 | lncRNA | downstream | 316617 | 37644896 ~ 37650316 (-) | True | XLOC_019770 |
| TCONS_00039683 | lncRNA | downstream | 334300 | 37621675 ~ 37632633 (-) | True | XLOC_019769 |
| TCONS_00039255 | lncRNA | downstream | 344413 | 37621343 ~ 37622520 (-) | False | XLOC_019769 |
| TCONS_00038908 | lncRNA | downstream | 369017 | 37595791 ~ 37597916 (-) | False | XLOC_019769 |
| TCONS_00039256 | lncRNA | upstream | 484871 | 38457283 ~ 38458134 (-) | False | XLOC_019779 |
| TCONS_00038931 | lncRNA | upstream | 484871 | 38457283 ~ 38463146 (-) | True | XLOC_019779 |
| TCONS_00038937 | lncRNA | upstream | 632981 | 38605393 ~ 38618668 (-) | True | XLOC_019781 |
| TCONS_00039684 | lncRNA | upstream | 656896 | 38629308 ~ 38632907 (-) | True | XLOC_019782 |
| TCONS_00038942 | lncRNA | upstream | 753790 | 38726202 ~ 38730597 (-) | False | XLOC_019784 |
| TCONS_00038921 | mRNA | downstream | 3792 | 37941347 ~ 37963141 (-) | False | XLOC_019774 |
| TCONS_00038922 | mRNA | downstream | 15114 | 37948422 ~ 37951819 (-) | True | XLOC_019774 |
| TCONS_00038920 | mRNA | downstream | 33100 | 37915193 ~ 37933833 (-) | False | XLOC_019773 |
| TCONS_00038919 | mRNA | downstream | 33100 | 37915193 ~ 37933833 (-) | True | XLOC_019773 |
| TCONS_00038918 | mRNA | downstream | 77206 | 37787805 ~ 37889727 (-) | False | XLOC_019772 |
| TCONS_00038927 | mRNA | upstream | 24410 | 37996822 ~ 38031038 (-) | False | XLOC_019776 |
| TCONS_00038928 | mRNA | upstream | 40665 | 38013077 ~ 38031138 (-) | True | XLOC_019776 |
| TCONS_00038930 | mRNA | upstream | 156465 | 38128877 ~ 38153824 (-) | True | XLOC_019778 |
| TCONS_00038932 | mRNA | upstream | 537053 | 38509465 ~ 38582061 (-) | False | XLOC_019780 |
| TCONS_00038933 | mRNA | upstream | 538673 | 38511085 ~ 38581903 (-) | False | XLOC_019780 |
| TCONS_00038902 | other | downstream | 893853 | 37072951 ~ 37073080 (-) | True | XLOC_019765 |
| TCONS_00038875 | other | downstream | 3430559 | 34430460 ~ 34536374 (-) | True | XLOC_019748 |
| TCONS_00038861 | other | downstream | 4829850 | 33136948 ~ 33137083 (-) | True | XLOC_019739 |
| TCONS_00038828 | other | downstream | 5884784 | 32076707 ~ 32082149 (-) | True | XLOC_019725 |
| TCONS_00038827 | other | downstream | 5885555 | 32073529 ~ 32081378 (-) | False | XLOC_019725 |
| TCONS_00038929 | other | upstream | 90785 | 38063197 ~ 38063314 (-) | True | XLOC_019777 |
| TCONS_00038943 | other | upstream | 754687 | 38727099 ~ 38730018 (-) | False | XLOC_019784 |
| TCONS_00038955 | other | upstream | 1294813 | 39267225 ~ 39267306 (-) | True | XLOC_019791 |
| TCONS_00038972 | other | upstream | 2105539 | 40077951 ~ 40081929 (-) | True | XLOC_019807 |
| TCONS_00038990 | other | upstream | 2430848 | 40403260 ~ 40411647 (-) | True | XLOC_019813 |
