RNA id: TU1159236


Basic Information

Item Value
RNA id TU1159236
length 3049
RNA type TUCP
GC content 0.43
exon number 1
gene id G1019189
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 76818505 ~ 76821968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCGAGTCAATAAGATATTTATGGGATAGCTAGACTAACGTTACTTCTCCTTATGGGATAGCTAGGCTAACGTTACTTCTCCTTATGGGATAGCTAGGCTAACGTTACTTCTCCTTATGGGATAGCTAGGCTAACGTTACTTCTCCTTATGGGATAGCTAGGCTAACGTTACTTCTCCTTATGGGATAGCTAGGCCAACGTTACTTCTCCTTATGGGATAGCTAGGCTAACGTTACTTCTCCTTATGGGATAGCTAGGCTAACGTTACTTCTCCTTATGGGATAGCTAGGCTAACGTTACTTCTCCTTTGTTAGCCAACAAAAGCTAACACAGTCACATCAATCAGCTGAAATGATAAACTAGGTGCACTTTCATTGGTTTCAACTTTGTTTATATTGGCATATCTTTGGATATATTAATTTTAAATAGTCATGATAAATTCATTTGCCCTGGATCAGAGAAGCAGTCAGTCTCGTCACGTTCATATATGCGTGACACGGTGGAGATCACAAAAAAACTGCAACATGTTGCACAAGTCAGATAGTCACACAGCGAGACTTAGCTATTACCCCGCTGTACCCAAACCAATGCTAGGCTAGTAGCATGGGGAAATATTGTCTAGACGCTTTTTTCGAAGGTTGATTGACTGGCTGGGCTGACCATGTAATAGAAACCATTATGATCTAAGGGCCAAACTGATCCTATATAAAGGACTCGGAATATAACACTTTGTGAATACAATCCCAggtatcattgactctgtaccctgtatatagcctcgttattgttattttgtgttacttgtattattttttactttagtttatttggtaaatattttcttaactcgttcttgaactgcactgttggttaagggcttgtaagtaagcatttcacagtaaggtctaaacctgttgtattcggcgcatgtgactgataaagtttgatttgatcactAAGAGTAAGTACCACTAACAGGGTGAAATAGAACAGACAGAAACAAAGCAGCAACCACTCCTGGAAAGTCAATAGGATgcctcccaaatgacaccctattctctatatagtgcactacttttaaccagagccctatgggtagtactGCACGaagaagggaatagggtgccatttgggacacaaaacAATGAAGATCAAACCTATAAGGGCAATTCCACAGCAGCAGGagtgtgaaatgttttttttggtaTCTCAGATTGGTCTCACTTCCTCCCAGTGGAGTTCCTATGTATGTTTATTAACATTTGTatcaaaccatttttttttttagaaaatcaGGATGAAATTTAATTGAATAAGGCCCTTTTTAGACttatacatgcctcctgtaagaaCCTATGATGTGTGAACCGTACACGATACAGACATCTTGGTGTCGTTATAGTCCTTCGTGTtctgaaatacacattttcacattcatttattcaacataAAAAATATTAATCTCAACTACCCttattgattttttttaacaATATACTCTTCAAACATCACATTTCCAGAGTTGGATCTCTGGTACTTTTCATAATATGACCCATTTTACACAGAAATTGACATTGGTCATGAACCAATCACAGCCCTTCTTTAGGATTGCACATTCAGCAAGTCACCAGCAGAGGGCGTTCCCTTTGAATCCATTTCCCATTCAATGTGCTGGTGGTGATAATAACATTGCTAAATTTGAAGGTATGATCAgagagcccactctggaaatgtgaTGTACTAGTAGAGTATATTGTTCCAAACACATGaactaaaaaaataaacaataattACAAGGGGATAGTTtatgttgaataaatgaatgtgaaAATTGTATTTCAGAATCTAGTCATACTCCATATTTTAGAGCACACTATAAGGTTTATTAGGATGACACCAAGATGGCTAACTTGTACGGTTCACGGATCATAGGGTCTTAGAGTTTGGTTGGTTCATGATTGTGCTCTGTCTTAAGGTTTTATAGTTGTACGGTTGTCCGTAGCGACACATCAGTAATGGCTTGACTAGTTTTTCCTTCTTTGTTTTTGTATGTTGACAATTCATTATTTGCTGCACTGCTCATCTCAAAGTAAGTCAGCAGAACTGACTAGAAAACGACAAGATTAGTGATGGATAACCATGGCAGCTTCACATAGGCTATTCTTCTACAGTTAGTGGGAGAACAAAAGGAATGACACGATGAATGAAACCGAGACATGGATCTCATAAGGGAAACAACTAAAAGGACTGACAGAATGGTTGTTCTAGTCCCTAACATTGAGAGAGACCTGAACTACAAACAGGCCAAGGTGACACACTGTACTATTCCAGAGAAAAGCCCTTCTCAGATATCCATCCCCAGACAAAGCTCTGCGGATGAATCAGAGTCCAGGCATTTTTGGGAGGGGCCACAAATTACTTGACCTATCAGAGACCCCAGCCCCCTTCACGAGTATTGAAGAATAGGATGAATTGACCAGCCACTAGACGCTGATCTAGGGACAGTTCTTAGTAGTTCTCgccctaatggttaaggttaggggttgtGTAAGGGTGAGAGGATGCTAGATCTGTGCAGGTGGGCAACTTCTAACCGCTGCCCATCTCCGGTGGAACAGGAAGTATATCCTCTCACTGACCAATGACAGAGTCAGTCTATATCTCACTGACCAATAACAGAGTCCAACCACTTCCTGTATGCGAGGGCGAAGCGTCCCTGCTCAGGGGAGCGGCAGCTGTCCAGGACACTGGCTACGAAGCTGTGCTCTGAGGGAAGAGCAGGGGGGCAGGGGCCAGGGGGACCCCTCTTCAGGCGCTTGGTGTCACGGGGGTCCGGGACCCCAACCCCGTCCACTTCCATGGCATCCTGACCCTCCTGAGCCTGTCCATTCCTGCGCTGCACCCTGTCTAGACCCACACCTCCAGGGCAGGCCGTGTGAGGGTGGCTGCTCAGCCCAGCATCGGTGTGGTTCGGTTGGGGAGACTCGCTGCCGAAGCCCTGGCCGTAGTGGTGGTCCCTCCTCCAGTGGTGCCAGAGGTAGAAGACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1159231 lncRNA upstream 1948 76816204 ~ 76816557 (+) True G1019184
TU1159225 lncRNA upstream 10063 76808219 ~ 76808442 (+) True G1019178
TU1159220 lncRNA upstream 12179 76806022 ~ 76806326 (+) True G1019173
TU1158814 lncRNA upstream 17412 76800712 ~ 76801093 (+) True G1018841
TU1158808 lncRNA upstream 34059 76784202 ~ 76784446 (+) True G1018836
TU1159244 lncRNA downstream 5404 76826957 ~ 76869109 (+) True G1019193
TU1159292 lncRNA downstream 56553 76878106 ~ 76880791 (+) True G1019226
TU1159309 lncRNA downstream 82526 76904079 ~ 76907220 (+) True G1019242
TU1159315 lncRNA downstream 95385 76916938 ~ 76920807 (+) True G1019246
TU1159320 lncRNA downstream 115677 76937230 ~ 76937615 (+) True G1019251
XM_036936390.1 mRNA upstream 156278 76617410 ~ 76662227 (+) True LOC118937404
XM_036936386.1 mRNA upstream 217939 76396096 ~ 76600566 (+) False LOC110536406
XM_036936388.1 mRNA upstream 217939 76396651 ~ 76600566 (+) False LOC110536406
XM_036936387.1 mRNA upstream 217939 76488456 ~ 76600566 (+) False LOC110536406
XM_036936389.1 mRNA upstream 220459 76396248 ~ 76598046 (+) False LOC110536406
XM_021622173.2 mRNA downstream 27421 76848974 ~ 76856364 (+) True LOC110536409
XM_036936395.1 mRNA downstream 68146 76889699 ~ 76939449 (+) False mamdc2a
XM_036936402.1 mRNA downstream 122167 76943720 ~ 76991807 (+) False slc39a14
XM_036936396.1 mRNA downstream 122171 76943724 ~ 76991807 (+) False slc39a14
XM_036936397.1 mRNA downstream 122171 76943724 ~ 76991807 (+) False slc39a14
TU1158552 other upstream 273084 76488508 ~ 76545421 (+) True LOC110536406
TU1158566 other upstream 292938 76524138 ~ 76525567 (+) True G1018678
TU1157297 other upstream 1489768 75300338 ~ 75328737 (+) True G1017593
TU1157292 other upstream 1512146 75300338 ~ 75306359 (+) False G1017593
TU1154814 other upstream 3650063 73167603 ~ 73168442 (+) True LOC110535110
TU1159301 other downstream 68174 76889727 ~ 76910379 (+) True mamdc2a
TU1159638 other downstream 312338 77133891 ~ 77134576 (+) False LOC110536414
TU1159971 other downstream 586476 77408029 ~ 77410527 (+) True LOC110536420
TU1160015 other downstream 646676 77468229 ~ 77469925 (+) True G1019753
TU1160074 other downstream 794777 77616330 ~ 77618204 (+) True G1019804

Expression Profile