RNA id: XM_036936390.1


Basic Information

Item Value
RNA id XM_036936390.1
length 2807
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC118937404
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 76617410 ~ 76662227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGCCTATTCCCACGCACCCCCGCCTCTCCTCCACCGCCCTTCTTGTGCCTCTGCCAAAATATGTGAAACGCAATCCTAGCTCTGGTCACAGAGAGCAGTTATTTTAAAACTTCAAACTCTGCCACCTCGATACGACCATGCGTAATGACGCTAAGATCCACGAACTCAACTGACAGATCTCTGCTTTAATTTGGGATCAAAACTAAAATGATCAACCGCCTCCTCGCTTGGAGTTCACGTTCGATCCACGTTCGGTAGTTTGCTGTCCTTTCTCCGCTTGCGCGTCTCCAATGTCTCTCCCGGTAGTTCTCCCCGGATCTTGTTGCTCTGTAACCAGGGTTCCGCTGGCCTCTCAGTTGGCAGACCCGACGTTCAGGATCCGGCCGCCCCGCTGCATATCTGCCTCTCGCATGCCTGGTTCTCAGTCGAGGCTGCTCCCAGCGCTGCTCCCCGGCCGCCCGCTGCTCTCCCTCGGATTACTGCAGCTGGTTCTCGGCTGCTCCATGGTCGCGCTCTCCTTCGGAGCTCTCTCCCTCAGTAGCTCTCCACCCATCCGAAACTCATGCCCTTTTTGGGCTGGGTCTTCAGTGATCCTGTCAGGGATCGTTGGCCTCACAACATGGAGGAGACCCATGCTGCTGCTGGTGAATCTGTTTGTTCTGCTGTCGGTGGTGTGTGTTCTCCTCAACCTGGCTGGCTTCATCCTCTGCTGCCAGGGGGCTCAGCTGGTCTCCACCATGACCAACTGCCAACTgAGCGAGGCGGGAGATGTGTGTAACTGTTGTCCCCAGATCTCCATGTGCCCTGAGGAGAAACTACTCAAACTCTACCCTGGGCACTCCTGTAACACCATGAGGGTCCtgctcaagaAGGTTCTATTTGCTCTGTGTGTTCTGAATGCTCTGACCACTGCAGTATGCCTGGTGGCTGCTGCCCTGCGGTACCTACAGATCTTCACCACACGGCGCCCATGTATGGATGACCCCAGGCCAATcacagaggaaggggaggagacaaatATTGTCCCTGACCCAGATGAGTTTGTCCCCCCTGCTCCTCCCCCGTCCTACTTCTCAACCTTCTACTCCTACACCCCCCGGCTGGCTCGCAGGATGTTTGGGGACAGTGTGATACCTCTGCCTCCTGTCTATGCAGCCAGGATTAAAGGAGTAGAGGTGTTCTGTCCTCTTGACCCTCCCCCTCCATACGAGGCTGTTACAGGAGGCTCCGCCCTCGCCACTGCAACACAGGAGACAGAGATTCGGATTACCATGACAGATCTGCCTGAGTTGGTGGAGGAGCGGAGTGACCGCTCGGAGACGGGTACTCCTGTTAGAGATGCTGGTCCCCAGACGACAGTTGTTCCAGTGCCCCCGTCTCCCCAATATCACCCCTCTCCCCAATCTCCGCCCTCCCCCTCCCTGCACCAGGCCAGACCTTCCCAGGACCAGGGTGCTCCTGTGCCACCCATTAGGAGGTCTCAGCGCCAGAGACCCAGACGCTCTAACAGTGACCCTGTCCTACTGGACCTGGCTGCCAAAGtGTTAAGCTGTGAAGCAGCCACACAGACCACCGAGGTCTCCACCCAGACTTCCAAGTCCGCCCTGGCCTCCCAGTCGTCCCGGCCCCAGACGGTGGCTCTCCGGCGGGGTGGTAGAGGCCCGCGGCGTCCCCGGCCCTCCTCTATGGTGGACTACCAGAGCTACAGACACACCCAGCAGCTGGTCAGCAGGTTTCTAGAGCAGCCGGCCCACTGCAGCCTGACACCCGAGGTCCAGGAGCTGGTGGACAGCATCCGTAGCGTGCTGCGCTCAGACCAGGaacacatggaggaggccgtCCGCTGTGCCAGCTTCATAGAACAGgtgatCACAGTATCAGAGACACCAGTTGGAGCCCTgccccagcccctgtccctccCCAGGGGATGCTCCAGACCCCATGTCCCCATGCTGGACTGTTCCTCCCGGACCCTCCCCCAGCCCCTCCGGAAGAGGCCCGGCCTGCTGCACCTGCGGAGTTGTGGAGACCTCAGCACTTTCACCTGGGCAGAGCAGCAGCCACTAGAGGCCAGGCAAGGTGGTGGATCTGGCTTCAAGTCCTGGTCTAGAGCGGGTTCTAGAGTAGGTTCTAGGTCGACGTCACGGGCGGGCTCACGCCTGGATCATCACGAACGCCCCCACAGTCTCATAGGGGTGTTTAGGGAAACGGTGATCTGATGGAACCCTCTTCCTATCCCAACACTCCCCGAGCACAAACTGATGGCAAGGTCCACTGGGGGAAACACCTTATTGACTCCAAGGAAAAGGCGCCCCCTGGTGGCGAGGTTTGGGAATGCCACTGCTAAACCTTGTGGGGAAAAGCCATTCTAAAGAACTTTGAAACTGAGTCCCACAGACTGCAAGTACTAGCCTTTAGAAGGGCTGTGTGTGTGCGGCTGCGTGCGTGTGTTGTGTgcctaaggtgtgtgtgtgtgtgtgtctgctgcactaatactgttgaagtgtatgtacagtgtgtagtGTTGTCTGTACACTGTTGTTTGCATTGTGAAAGAGGTGACCTGGGAATCAAAGGTTTCAAAATTGTCTCCAAATATTTCCATTAACAATTCTGTGTTACAAGCTACTATAAAATGATTGGCTGTACATATGACAGCACTGAACCCTACCTGCATGTGAGAGTCTATGgaaggctctctctctcgctatactTCACTATCTGCCCAGTGCCTTAAGTAAAAGCAACATGGAATGTTCCATATAAAATGTTCAGTATTTAATTAAACTGGCCATGCACTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1158675 lncRNA upstream 59017 76556948 ~ 76558393 (+) True G1018740
TU1158674 lncRNA upstream 61627 76554731 ~ 76555783 (+) True G1018739
TU1158668 lncRNA upstream 80909 76534301 ~ 76536501 (+) True G1018734
TU1158665 lncRNA upstream 84771 76529584 ~ 76532639 (+) True G1018731
TU1158663 lncRNA upstream 87470 76528670 ~ 76529940 (+) True G1018730
TU1158716 lncRNA downstream 411 76662638 ~ 76668757 (+) False G1018764
TU1158725 lncRNA downstream 411 76662638 ~ 76745469 (+) False G1018764
TU1158727 lncRNA downstream 411 76662638 ~ 76668757 (+) True G1018764
TU1158699 lncRNA downstream 6740 76668967 ~ 76754910 (+) True G1018762
TU1158759 lncRNA downstream 16477 76678704 ~ 76679127 (+) True G1018792
XM_036936386.1 mRNA upstream 16844 76396096 ~ 76600566 (+) False LOC110536406
XM_036936388.1 mRNA upstream 16844 76396651 ~ 76600566 (+) False LOC110536406
XM_036936387.1 mRNA upstream 16844 76488456 ~ 76600566 (+) False LOC110536406
XM_036936389.1 mRNA upstream 19364 76396248 ~ 76598046 (+) False LOC110536406
XM_036936385.1 mRNA upstream 232832 76371045 ~ 76384578 (+) True fxn
XM_021622173.2 mRNA downstream 186747 76848974 ~ 76856364 (+) True LOC110536409
XM_036936395.1 mRNA downstream 227472 76889699 ~ 76939449 (+) False mamdc2a
XM_036936402.1 mRNA downstream 281493 76943720 ~ 76991807 (+) False slc39a14
XM_036936396.1 mRNA downstream 281497 76943724 ~ 76991807 (+) False slc39a14
XM_036936397.1 mRNA downstream 281497 76943724 ~ 76991807 (+) False slc39a14
TU1158552 other upstream 71989 76488508 ~ 76545421 (+) True LOC110536406
TU1158566 other upstream 91843 76524138 ~ 76525567 (+) True G1018678
TU1157297 other upstream 1288673 75300338 ~ 75328737 (+) True G1017593
TU1157292 other upstream 1311051 75300338 ~ 75306359 (+) False G1017593
TU1154814 other upstream 3448968 73167603 ~ 73168442 (+) True LOC110535110
TU1159236 other downstream 156278 76818505 ~ 76821553 (+) False G1019189
TU1159237 other downstream 156278 76818505 ~ 76821968 (+) False G1019189
TU1159238 other downstream 156278 76818505 ~ 76821663 (+) True G1019189
TU1159301 other downstream 227500 76889727 ~ 76910379 (+) True mamdc2a
TU1159638 other downstream 471664 77133891 ~ 77134576 (+) False LOC110536414

Expression Profile