RNA id: TCONS_00040133


Basic Information

Item Value
RNA id TCONS_00040133
length 1706
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_020173
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8612462 ~ 8748801 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCCCAATGTTCTCCAGGTGTGTTTGGTGCGAAGACAAATGAAATTAAACTGGTGTTGGAGGGAGATACGGTAACATTACCGGCTGAGGTACACGGAGATGAGCTGCTAATTTGGAGGTTTGGACCGGACGGGACAATGATTGCAAAGTTTAGTAAGAAAAACGGAGAATACGTCATAATGCCTGTCGAGAGATTCAGCAGCAGACTGATGCCGGAGTACGAAACTGGATCTCTGATTATCAGAAACATCAGAACTGAGCACGCTGGGCTTTATCAGCTACAGACCATCAGTTCCACAGTCTCAACGAAGACATTCACTGTTTCTGTCTATGCTCGTCCACCCATTCCTGTCATTACCAGAGACTATTCGCTATGTTCTTCATCAACATCTTCCCCATCACCCTCAGCACCATTCCAGTGTTCACTAgtgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtgtattgtCCAACATCAGTGTGTCTGACCTCAGCAGCAGCGTATCTTTACCTCTGGAGGTGGAATATCAGGATAAaaacacctacagctgtgtgaTCAACAATCCCGTCAGCAACCAGACCACAAATCTGGACATCGACATACTCTGTCAACCTTGTCCAGCTCCTCTGCCAATTCCCGTCATCAACACCACAGATTCTCCACAATGTCCTTCGTCTGCATCACTCCAGCAGTGTTCACTAGTGTGTTCAGTGGTGAACGTGAGtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagcgcgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgGTCAACAACACTATAATGAACCTTACTCGACGTCTGGACATGGACACACTCTGTCAGTCATGTTCAGGTACTGCTTATATTAGAAATCTGGCAAATTTGTCTGTCAACTTTAATTATTAAGAGGTGGTTTTGTCTTTCCTCAGGCCGCGTTCACTGTTGTGGCTTTACTGAAACCGTGATCCGATTGGTTGCCTCTGCTGTGGTGGGCGTGGCTGTTATTGCTGTGCTGGTTTATGATGTCAGATCCAGCAGATCTTACCAGAAGAGGAGACTGCAGACGGCATCAGGGCAAGcagatgattatgatgatgtcGCAACAGCTCACTAGGTGGCGATGATGTCGCCTTTGTCTGTTATGGCTGTCGGAAATATTCCAGGTTAAATGCATTCACAGGAATGATCTAATGGACGCTTGGGTTTTAACCCTTCGCTGACTGATCGTAGTGCCATCTGGTGGTTATTTGTGgcacttattgttttatttgacaaataGGCTGCGTGTATGttgctgtgtttatttttttgctgcacTTTTTGatgtaattatacatttttttatgccttaataagtttattttaatatgttgtttgattatttgctgttaatttacataTTATGTATAATACTTGAATGGACTGTTATGAAATTGATGGCTTGTTTGTTACATTCATGccatttttttagtattttaggTTTCAACAAAGAATTAATTGTAATATCGAGCAAAGTTATTAAAGACAGAACATTTTCACGGATATTAACCTGTCGGTCTTGCTCAGGATGCATTTCAAATTAGTTTTGCtgtatttgtttaataataaatcacCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000114586

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041878 lncRNA upstream 37555 8571065 ~ 8574907 (+) False XLOC_020171
TCONS_00041879 lncRNA upstream 37655 8571068 ~ 8574807 (+) True XLOC_020171
TCONS_00041875 lncRNA upstream 41068 8570105 ~ 8571394 (+) False XLOC_020171
TCONS_00041877 lncRNA upstream 41123 8570621 ~ 8571339 (+) False XLOC_020171
TCONS_00041876 lncRNA upstream 41231 8570288 ~ 8571231 (+) False XLOC_020171
TCONS_00042055 lncRNA downstream 31932 8780733 ~ 8808460 (+) False XLOC_020180
TCONS_00042056 lncRNA downstream 51654 8800455 ~ 8808460 (+) True XLOC_020180
TCONS_00042057 lncRNA downstream 72696 8821497 ~ 8837723 (+) True XLOC_020181
TCONS_00042058 lncRNA downstream 89624 8838425 ~ 8854534 (+) False XLOC_020182
TCONS_00042059 lncRNA downstream 100328 8849129 ~ 8854534 (+) True XLOC_020182
TCONS_00040132 mRNA upstream 10687 8596974 ~ 8601775 (+) True XLOC_020172
TCONS_00040131 mRNA upstream 58671 8551813 ~ 8553791 (+) True XLOC_020170
TCONS_00040130 mRNA upstream 68833 8536838 ~ 8543629 (+) True XLOC_020169
TCONS_00040129 mRNA upstream 121202 8489400 ~ 8491260 (+) True XLOC_020168
TCONS_00040128 mRNA upstream 172063 8407707 ~ 8440399 (+) True XLOC_020167
TCONS_00040138 mRNA downstream 4291 8753092 ~ 8770357 (+) False XLOC_020179
TCONS_00040139 mRNA downstream 4564 8753365 ~ 8769471 (+) False XLOC_020179
TCONS_00040141 mRNA downstream 23562 8772363 ~ 8788193 (+) False XLOC_020180
TCONS_00040143 mRNA downstream 51054 8799855 ~ 8809496 (+) False XLOC_020180
TCONS_00040144 mRNA downstream 51631 8800432 ~ 8808344 (+) False XLOC_020180
TCONS_00040122 other upstream 346813 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1168257 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040109 other upstream 1168417 7443315 ~ 7444045 (+) False XLOC_020142
TCONS_00040108 other upstream 1168440 7439527 ~ 7444022 (+) False XLOC_020142
TCONS_00040103 other upstream 1663956 6943403 ~ 6948506 (+) False XLOC_020139
TCONS_00040140 other downstream 17566 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040142 other downstream 37366 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040167 other downstream 611098 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 1038266 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 1410357 10159158 ~ 10164164 (+) False XLOC_020223

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_08742145_08754205.mRNA True 3532 mRNA 0.42 10 CI01000030 8742040 ~ 8755601 (-)