RNA id: TCONS_00042058


Basic Information

Item Value
RNA id TCONS_00042058
length 1526
lncRNA type read_through
GC content 0.37
exon number 3
gene id XLOC_020182
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8838425 ~ 8854534 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACAAGAGACTGATTATTCAGCTTCAGTCTCTTCCTCCTCTTACGGTAAAGTCTGGAGGGGAAACCGCTGAGGATTCTTGGGCATGCGCACATCAATGTAGATTTCTTCCTCCACTGACGGTAAAAGGGGGAAGGGCAGCGATTCTTGGGCATGCGCAGTTGCGCACATCAATGTAGATTTCTTCCTCCACTGACGGTGAAAGAAGGCTGGAGGGGAAACAGCTGCGGATTCTTTCTTGGGCATGTGCATTGCGCACACCAATGTAGAGAAAGTTTGTGACGCTGCTCAACAATAATCAGCATTTTTGTTActgtgtagatgttaataaaacaaaatttaattagttatttaataaataaatctagttAACTTCTGGTTGAACTAAGGAAAACATTTCGTCAACACCATGCCCTTGTGTCTTCTGAAGACCTAAGTGTGTTTAAGGAAGAAATGTTAAAGTTTTACCAACACTGCTATTTTACCAATTTTAGTAGCTATTTATCTTTAGTTTTGGCTTCATATTTGTCTTGGAATAAGACTGAGTGTGTGTCTTGAGTGCTAACTTGCATTATGCAAACTTGCTAACTTTCTTTTTAATCAGCTATGTTTTATATTACGTATAAGAGACTTTATAATCGGGCAGATAAAGAAGAATAAGCTCAAAAAGAGATTGTCAATGGTTTTACCAGTACATGTGGGGGCGTCCACTGTTTTGTACTTGCCAATGTAGTCAAACGAAATACAGTATACAATTTTAAAGGTTAGTTTTAACTGAAATGTTTTCTCACATTTAAGTTTGCTAAACTATTTTCAGCGTTTAAAACTCACAGGTTTAACTGCGCACAAGTCTATATGAGGAACTCACATTTTAAACTGCAAATCTAGCTGTTCATTTTACCAGAAGCACTTTATGACCTTGCGCATGTACTATAGTTGCAGTTATTTCTGAGAGAAGTGTGAAGATATAATCGGCTCTTTCTCTCTGCTTATAGTGGACATCTAACCACAATTCAAGCTCGCACTGTTGACATGAGCAAGATCTAAAACACTATTTTCTTTCAGATGTAATAACAGAAAAAGGCCAGCAGAGTGAGAGCGAGAAATTCAGTTAAATAGCAGACCCTTCTATTTAACAACATTACTATCACTCACAGTTAAAGCAATAACAAGCTCACACTGATGCTGTTTATTGTTTCATTACCTGTGGCAGTCACAGTTGATGGAGGATTGGGATGGGAGGTGATGGGAGTGGGTGATGGAGAAGCTTGAAAAAATGTCAGGTAAAACAAAGGTAAAATAGATGCTTCTTTATAGTTAGTCTGTTGTTGAAGGAGAGCAGCTTTTATTCACTGAATTAAGGTTTAAAGTATGGTTTAAGAAACTTGTAAGAAAAGAAAGACaaaggaatatttaaaaatatgaagcTGTGACTTTCAAAGTAAAGATCTACTAAAGCACCcttgaaacattatttttatgtaatttccactgaaacatgaagacactGTGGGACATCAAGTAGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042057 lncRNA upstream 702 8821497 ~ 8837723 (+) True XLOC_020181
TCONS_00042055 lncRNA upstream 29965 8780733 ~ 8808460 (+) False XLOC_020180
TCONS_00042056 lncRNA upstream 29965 8800455 ~ 8808460 (+) True XLOC_020180
TCONS_00042053 lncRNA upstream 76795 8621298 ~ 8761630 (+) True XLOC_020174
TCONS_00042054 lncRNA upstream 138495 8697259 ~ 8699930 (+) True XLOC_020176
TCONS_00041880 lncRNA downstream 31514 8886048 ~ 8894141 (+) True XLOC_020183
TCONS_00041881 lncRNA downstream 72831 8927365 ~ 8953552 (+) True XLOC_020184
TCONS_00042060 lncRNA downstream 132620 8987154 ~ 8996332 (+) True XLOC_020185
TCONS_00041882 lncRNA downstream 211552 9066086 ~ 9066418 (+) True XLOC_020189
TCONS_00041883 lncRNA downstream 239474 9094008 ~ 9096110 (+) True XLOC_020188
TCONS_00040143 mRNA upstream 28929 8799855 ~ 8809496 (+) False XLOC_020180
TCONS_00040144 mRNA upstream 30081 8800432 ~ 8808344 (+) False XLOC_020180
TCONS_00040141 mRNA upstream 50232 8772363 ~ 8788193 (+) False XLOC_020180
TCONS_00040138 mRNA upstream 68068 8753092 ~ 8770357 (+) False XLOC_020179
TCONS_00040139 mRNA upstream 68954 8753365 ~ 8769471 (+) False XLOC_020179
TCONS_00040145 mRNA downstream 125421 8979955 ~ 8996337 (+) False XLOC_020185
TCONS_00040146 mRNA downstream 148556 9003090 ~ 9009188 (+) True XLOC_020186
TCONS_00040147 mRNA downstream 154962 9009496 ~ 9057108 (+) False XLOC_020187
TCONS_00040148 mRNA downstream 173350 9027884 ~ 9032861 (+) False XLOC_020187
TCONS_00040149 mRNA downstream 179752 9034286 ~ 9040190 (+) False XLOC_020187
TCONS_00040142 other upstream 52132 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 69032 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 139192 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 572776 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1394220 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 505365 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 932533 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 1304624 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1639721 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1699194 10553728 ~ 10558972 (+) True XLOC_020230