RNA id: XM_036937438.1


Basic Information

Item Value
RNA id XM_036937438.1
length 2901
RNA type mRNA
GC content 0.47
exon number 8
gene id abr
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 34134508 ~ 34360009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCCGTGTCTCTGTTTGCGTTACTGGAAATCAGATTGTGAACCGTGGAGATGCTGGCAGAAGCACAGTGTGGAATAGTCTTGACATCCCAGAGAGGGACCAGTGTGGAATTCTCCGGCTTTAGAAGAAGACTGAAAACCATCTCAGGATTCTCTGTTCTCACGGATTGAAGCTGCCCGTCATACGTTGTGCCTTCCTTGTTGCCTCATCTTACATTTGAAACGGACATTTTCACCTTCAACTGAGGGAGACCTTTTTTCGTCTCAACATTTAGAAGAAAATCCCCAACCTTAGACGTGAGGATTTTCTGGACAGTACTGGATCTGACCACTCTGGAAGTGGATACCTTTGAGATTTTACTTCCTGTTAGTTCATATTAACCCCTTGTGGGCCAGACGTCTCAGCACACAGTCTCAGGTAGGATGACTGAAGTCCTGGTGTCCGACATGAACCTGAACACAGTGTGTGAGCGGCTGGAGCAGCACTGCTGTGTGGTGGACCAGCAGCAGAACAACCAGCAGCAGCTTCAGCAGCCTCAAACCCCCTCCTCAGCCATCAGGAGGCACACCAACACCGGGGCCAAGCTATGGGGTCGCGTACGCAGCAAGCTCCTCAGACAAAAGCTGGACCCCCAGACGGTTCAGTCTAAGAACTGGCACATGGACGTCATAGAGATGAACGGGATCAAAGTGGAGTTCTCCATGAAGTTTACGAGTCGGGACTTGAGTCTGAAGAGAACGCCCTCCAAAAAACAGAGTGGGGTGTTCGGGGTCAAAATCAGTGTGGTGACAAAGCGCGAGCGCTCCAAGGTGCCTTACATAGTCCGCCAGTGCATTGAAGAGGTGGAGAAGAGGGGGATCGATGAGGTGGGAATCTACAGGATCTCCGGGGTGGCCACCGACATCCAGGCCCTCAAAGCAGCATTCGACACCAATAGCAAAGACATCCTGGTGATGTTGAGTGACATGGACATCAATGCCATCGCGGGAACGTTGAAGCTGTACTTCCGTGAGCTGCCAGAGCCCCTGCTCACTGACCGCCTGTACCCAGCCTTCATGGAGGGCATAGCTCTGTCGGACCCTGCAGCCAAGGAGAACTGCATGATGCACCTGCTGCGCTCTCTGCCTGACCCTAACCTCATCACCTTCCTCAGCCTGCTGGAGCATCTCAAGAGAGTTGCTGACAATGAGCCCATCAACAAGATGTCCCTCCACAACTTGGGCACAGTGTTTGGCCCCACCCTGCTCAGGCCCTCTGAGTCCGAGGTCACCAAGGGACACATCACCCTGGCCACTGACATCTGGTCACATGACGTCATGGCACAGGTCCAAGTGTTGCTGTACTACCTGCAGCATCCTCCCATCTCCTTCGCTGAGCTGAAGCGGAACACACTCTACTTTTCCACTGACGTTTAATCTCTTGGGGGTCCGGAGCGAAAGACTCAACAGCAAATCCCCCATACCACCCAGCTCCCTTTTAAAACTGTACAGCCCCCCTAAGACCCACCCAGCCTACTCTGAGAGATGGAGTCAGACGTGGAGGAAGAGGAGTCACGGTGCTTCCTCTGGATCCCATAGTCACGTCTTCTAGTGTCAGCGGAGATAGAGCAGCGGCCCCTACATTACAGTACATCCATCTGGTGAAGAGCAGGGGTGGAGGGAACAGCATACCTCTCACCTTTGACCCACAATACCCCATCGGACAGCCACCAATATGGGACCTCTCTATCTATCCGTGAGGGTTTAGaggtcagggtctggtatgtTACTGGGTCACTGTCGGTTGTTTGGTCTGTTGGGTCCTCCAGAAAGCAGCTCAATGATCCTGAAGCTGGTCTGTTACTTACTCCACCTTCTCTTTTATTTTCTTTCAGAGGCATTCCAAGAAAATGGCATTTacatattttataaatattatttGTTCAATAAGTCCTTTGTTTCTCTCTGGCTTTGTGCATGTGACGGAGGAGGGCTGTGTGTTTATGTAGAagcgtgtatgtatgtgtgtgtgtgtgtgtgtgtgttaaagcaAAGAGCTGAGGACTGTTTGCGTTTCCAAGCCGCCAGTAAAGTCATGTCAGTGAATGGCCACTGTCACATTTTTTCTCCATGTGTAAAGACTAGAGAGCACAGCCCTCCCTCTGTGTGAGTCTTGGCCAAATTCGCCCTatttattataaatatatatatattaagtgTGCCTGTACAGTCCAGGAGCTGGTTTCCCAAAAGTATCTCAAGGCTAAAGTCATCGTTAGAACcatagccttaagatgcttttgggaaactgggCCCAGTGCAACTAGAGAATTGCTCAAAGGAGTCTGTTGTTTGAAGTTTTTTCAAGTAGTGATGGTTTTTTCAAGTTTCTCATTCACAGCCAATGTTGGCTGTACTGAAACACAAAGTGTAAAATCTGACGTTTGATTCTAAACCTCTTTAAAGAAAGAAACATCAATCTGTGAGATGAGGGTTATGGGAAGAAAATCACACACATTTTTTGGAACATTTGCTTTTTTCTTGTCAATCCATTGCAAGCCTGTTCCTAGTGTCCAATGGCACCAGTTAATCTATAGGATTATTGTGTAGTTTAATGCCCTTATTGCATGTTCAACTGTCAATCAAATCAGGCTGGGTAACGAAGGTAGGTTGTCACTGCTAGTTTGCGGCACCGGCAATCTCCTCCCATCAAAGCTGTACAAATCCAACCTTTCTGCTATCTAGCCTGTGACATATCTTAAAATAAGCACTGTTAGATGAGTCCTATTTGATATTTTTAATATAAGATTAAAAGAAAATCAAATGTTGTATTTTACTTTGAGTATACTGTATTAACAAGGGTAAATGTCGATGTGAACTTTTTTCTTTTTTAGTAAAATTAATAAAAGTCTACCAAAACGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1210927 lncRNA upstream 239150 34072603 ~ 34095927 (+) True G1063064
TU1210867 lncRNA upstream 338401 33992745 ~ 33996676 (+) True G1063007
TU1210796 lncRNA upstream 454806 33877395 ~ 33880271 (+) True LOC110537484
TU1210797 lncRNA upstream 460464 33874066 ~ 33874613 (+) False LOC110537484
TU1210794 lncRNA upstream 462395 33872415 ~ 33872682 (+) True G1062938
TU1210985 lncRNA downstream 127469 34487478 ~ 34490407 (+) True LOC118937666
TU1210987 lncRNA downstream 184391 34544400 ~ 34547258 (+) True LOC110537489
TU1210992 lncRNA downstream 187351 34547360 ~ 34547843 (+) True G1063107
TU1211229 lncRNA downstream 196680 34556689 ~ 34557152 (+) True G1063337
TU1211234 lncRNA downstream 201254 34561263 ~ 34561501 (+) True G1063342
XM_036937427.1 mRNA upstream 457676 33873017 ~ 33877401 (+) False LOC110537484
XM_036937442.1 mRNA downstream 54379 34414388 ~ 34494475 (+) False LOC110537489
XM_036937439.1 mRNA downstream 54379 34414388 ~ 34545737 (+) False LOC110537489
XM_036937440.1 mRNA downstream 54379 34414388 ~ 34545737 (+) False LOC110537489
XM_036937441.1 mRNA downstream 88331 34448340 ~ 34545737 (+) False LOC110537489
XR_005034952.1 mRNA downstream 126065 34486074 ~ 34488427 (+) False LOC118937666
TU1210496 other upstream 673128 33658278 ~ 33661949 (+) True G1062648
TU1210369 other upstream 826214 33508319 ~ 33508863 (+) True G1062537
TU1210205 other upstream 968828 33359734 ~ 33366249 (+) False G1062404
TU1210206 other upstream 972472 33359734 ~ 33362605 (+) False G1062404
TU1208110 other upstream 2523730 31811062 ~ 31811347 (+) True G1060470
TU1211387 other downstream 407015 34767024 ~ 34770876 (+) True ubb
TU1211541 other downstream 616283 34976292 ~ 34981964 (+) True LOC110537506
TU1212928 other downstream 1110491 35470500 ~ 35471382 (+) True LOC110524522
TU1212912 other downstream 1127729 35487738 ~ 35488944 (+) True G1064849
TU1213738 other downstream 2032625 36392634 ~ 36393022 (+) True G1065619

Expression Profile