RNA id: TCONS_00042284


Basic Information

Item Value
RNA id TCONS_00042284
length 929
lncRNA type read_through
GC content 0.37
exon number 2
gene id XLOC_020725
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2520932 ~ 2539642 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agagtttgctctctatagaacaaaaattattggttttatttaatttaatattttcacacttATGGTGAAAAAGTGTCGTTACGGATGTGAcgaatgtgaaattgccacttgtgtgacgtTGGTAAagcaaatagaatagtttgaaaacactaaCAGATGAATTTGAGTGTTTCTAAAGTACTGTCAAATACTtgctacacaaaaaaaaaaacaagaaacgatttccgtattttggtaaaaacgtattttttttttatggcaagacTGACATATGCACAgaatttttcaaatatattctcGTCTGCAAATAGTCTTAAAACTTGATTTTGTGGTATAACAGAGgagtatttttctaattttgaGAATTTCCCCGTTCACCATTAACTGTCCTCATCTATTTCGAACTGTAATCGGAACTGGCTGGAACTGTTTTCactctagtgtggatcctcatgtgttgatgaaAATGTGATGATTgtttgaaactctttccacacgtagtacatgtgtacggtttctctccagtgtgaatcctcttatGTGATTTCAGAGTGTGTAACCGATTGAATGCCTtgctgcagtgtgaacacttgtacggtttctctccagtgtggatcatcttATGTGATTTAAAAGCGTGTAACTGACTGAatgtcttgtcgcagtgtgaacacttgtacggtttttctccagtgtgaatacTCTGATGTGATTTCAGGTTTTGTAACTTACTGAatgtcttgtcgcagtgtgaacacttgtaaggtctCTCTCCACTGTGAGTCCTCTGATGTGATTTCAGGTTTTGTAACTGATTGAatgtcttgtcgcagtgtgaacacttgtaaggtttctctccagtgtggatcctctggTGTTGTTTCAGGTTTTGTAAGTAAATGaagctcttgtcgcagtgtgaacacttg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042282 lncRNA downstream 24075 2466339 ~ 2496857 (-) True XLOC_020723
TCONS_00042281 lncRNA downstream 38443 2466273 ~ 2482489 (-) True XLOC_020722
TCONS_00042274 lncRNA downstream 87056 2209935 ~ 2433876 (-) True XLOC_020716
TCONS_00042272 lncRNA downstream 121888 2193464 ~ 2399044 (-) True XLOC_020715
TCONS_00042280 lncRNA downstream 172896 2266206 ~ 2348036 (-) True XLOC_020721
TCONS_00042287 lncRNA upstream 29535 2569177 ~ 2646010 (-) True XLOC_020728
TCONS_00042288 lncRNA upstream 59377 2599019 ~ 2623874 (-) True XLOC_020729
TCONS_00042289 lncRNA upstream 62575 2602217 ~ 2611809 (-) True XLOC_020730
TCONS_00042290 lncRNA upstream 163160 2702802 ~ 2791490 (-) True XLOC_020731
TCONS_00042291 lncRNA upstream 222448 2762090 ~ 2783884 (-) True XLOC_020732
TCONS_00040900 mRNA downstream 1161076 1320991 ~ 1359856 (-) True XLOC_020693
TCONS_00040898 mRNA downstream 1275706 1205787 ~ 1245226 (-) True XLOC_020688
TCONS_00040897 mRNA downstream 1283929 1205787 ~ 1237003 (-) False XLOC_020688
TCONS_00040896 mRNA downstream 1352641 1164656 ~ 1168291 (-) True XLOC_020686
TCONS_00040894 mRNA downstream 1441159 1073413 ~ 1079773 (-) True XLOC_020685
TCONS_00040902 mRNA upstream 335196 2874838 ~ 2886937 (-) True XLOC_020737
TCONS_00040903 mRNA upstream 355869 2895511 ~ 2922053 (-) False XLOC_020739
TCONS_00040904 mRNA upstream 357631 2897273 ~ 2929156 (-) False XLOC_020739
TCONS_00040905 mRNA upstream 371724 2911366 ~ 2929127 (-) True XLOC_020739
TCONS_00040906 mRNA upstream 391698 2931340 ~ 2937503 (-) False XLOC_020740
TCONS_00040899 other downstream 1290910 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 1361183 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 1703525 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 2173518 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 1055626 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 1772161 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 2279768 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 2288314 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 2358944 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

//