RNA id: TCONS_00004049


Basic Information

Item Value
RNA id TCONS_00004049
length 4365
RNA type polymorphic_pseudogene
GC content 0.42
exon number 7
gene id XLOC_002083
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21650828 ~ 21820133 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGCCTTCTTTGTAATGTGGCACGGTGCGGTGTTTTTTATGATTCTGTCTCGATACGCGGTGAAAGGGCAGATCAGCTACTCCATCCCAGAAGAAATACCAAAAGGATCAATTGTTGAAAATAATTCTCAGGGTTTGGGTTTGGATTTAAAAAGACTGAATTCAGGGAAGGCGCGGATATTTGCGGGAGACAACAGAAGATTCGTCGGATTGAATAAGGAGAAGGGGATACTTCTCACAGAGGAGAAAATCGACCGCGAGGCTCTTTGTGCAAAAACGACTCCTTGcgcttcacatctgcagctgatttTGGAAAACCCAATGCAAAAGTATGATGTCACAGTGGAAATCATCGATATAAACGATAATGCTCCGAGTTTTCCAAAAGGTGAAATTAGATTTGAAATAAGCGAGACGGCTGTGACCGGAGCAAGATTCATGCTGGAAAACCCGATTGATTTGGATGTTGGAACTAATAGTCACCTTAGTTATTCACTGAAACCGACAGATAATTTTATATGAAGTTCGCAAGGTCAAACGGATGGTGACAAAAACATGGAAATGGTATTACAAAAGGCTCTAGACCGTGAAAACAAAGAAAAGCTATCATTGATGTTAACAGCAGTAGACGGAGGAGAGCCTTCGTTGACAAGCACTGTACGTATACATGTTACTGTGCTCGATGCAAATGACAATCCCCCAGTGTTCAGCCAAAGGGTTTACAAAGCTACTTTTGCTGAAATTACACCAAAAGATACCGTGATTGCGTCAGTCAGCGCTTCTGATGCAGATGAAGGTTCGAATGCGATTATTACATATTACATGTCGAGCACTGGAGATGTAAATGATTTGTTTACGGTTGATACACGGAGCAGGGACATACGTTTAAAGGGCTCAGCTGACTTCGAAAAGGCAAGTCGATATCAGTTTAACATACAAGCACGCGACCAAGGAGGACTGTCTGATTCATGTAAAGTAATTATTGATCTCACTGATATAAACGATAACAAACCAATAATAAGCATTGTATCGATGTCAAATTCCATATCCGAGCAGTCTAGGCCTGGCACCGTTGTTGCaatgttaaatgtaaatgattttgaTTCAGGAATGAATGGCCGGGTTCACTGCTACCGAAATGACAATATTCCGTTTACTATTGCCTCTTCCAGTAGTTTTTTTAGCTTACAAACGGAGCAAGAATTGGACAGAGAGAAAGAAGCCGAGTATAATATCAGTGTGATATGTAGTGATGAGGGAGTGCCTGCGCTCTCCAGCAGTGTCTCCCTCCGTGTGCAGATATCAGATGTGAATGATAATGCTCCTGTCTTTGAGAAAAGTAACTATGAGGCCTTTGTCGTGGAGAACAACACTCCTGGTCTCTCTATATTTACAGTCAAAGCCAGTGATGCTGACTGGAATCAGAATGCTCGTGTTTCTTATATTCTTGAAGACAGCATTGTTAATGGAGTCTCGATCTCATCATATGTGTCAGTGCACCCTGAAAGCGGACTGATTACAGCTGTGCGCTCTTTTGACTATGAGACACTGAAAGATTTCCACTTCCGCGTAAAAGCGCAGGACGGAGGCTCTCCTCCGCTCAGTAGTAACGTGACAGTGAAAGTTACTGTTCAAGACCATAATGACAACGCTCCTCAGGTTTTGTATCCAGTACAGACTGGCGCTTCAGTGGTGGCTGAGATTGTgcctcgtgctgcagatgttgGATATCTGGTCACTAAAGTGGTGGCTGTTGATGTGGACTCTGGTCAGAATGCTTGGCTCTCCTATAAACTGCAGAAAGCTACAGACAGAGCGCTGTTTGAAGTGGGTTTACAGAATGGAGAAATAAGAACTGTGCGACAAGTCACTGATAAAGATGCTGTCAAACAAAAACTCACTGTTGTTGTGGAGGATAACGGACAGCCCTCTCGCTCAGCTGTGGTCTCCATTAACGTGGCTGTGGCTGACAGCTTTCCTGAAGTGCTGTCAGAGTTCACAGACTTTACGCATGAGAAACAATATAATGACAgcttaactttttatttagttcTCGCACTGGCCGCTGTTTCTTTCCTATTCATCACTTGTGTGGTTGTGATAATATCAGTTAAAATCTACAGATGGAGACAATCTCGCTTCCTCTATCAGTCCAATCTGCCTGTTATTCCGTACTATCCACCACATTACGCAGACACAGGAGTCACTGGAACTCTGCCGCACGGCTATAATTATGAAGTGTGCATGACGACTGACTCGAGGAAGAGTGACTGCAAGTTTTCTACTCTTGGCAGACAGAATGTTTTAGTGGTGGACCCGAGTTTCACTGAGACGATGCAGCACAcgatcaaaaaaaaaatgttccatcGATGGGCTCAGGATCACTAAATCGCAAAAGCCACCTAATACTGACTGGCGATTTCCCCCAAACCAGAGGCCTGGACCCAGCGGCCAACACAGGTTCCACACCCTGCAGCAGAGATGGACTCCATACGAGAAGTCCAGGGCTGGAGCACGTCCTGAAGAGGCAGGTGCCGGTGCTGGTGTGATAGCAGGAACAGGACCATGGCCCAACCCCCCTACTGAGGCTGAACAGCTCCAGGCTATGATGGCAGCAGCAAACGaagaaagaaacacacacaggtttgaaacaagtggacgCAAGTGAAGCCACTGCGACTCTTGGCCCTCGCTACAATCTACAGTATGGCCCGGATTACCGTCAGAACGTCTACATCCCAGGCAGCACTGCCACCCTTACAGCCAACCCTCAGCAACAGGTTCTCCAGCAGGCCCTTCCTCCACCACAGGCCCTTCCACCTACCGAAGCCCCCAAAGCGGCTCAAACACCAGCCAGTAAGAAGAAACCCACAAAGAAAGACAAGAAGTAAGACCTGTGGAATAGCTGAAGAAACATGTTGCCGGGAATCTAAACATCTATCCTCTCAAACCATGTTGGGTTTGGATgaagatttaaaaagaaaaaagtgaataGTATTACTTGTTTTAGCGTTAACATGAGACAATAAGCAACCAAACAAGAGGAAATGTGTTCAGATTCCCGAAGCCATTTCTCTGACAGATATCTCTGTCTTGTAAATAGCATACTAAAACAAGAAGAAACacatttcttctttttattttttccctcaaatgTCACGTTTTAGGCTTTTTGTGTTCTTTTCAAAGCAAAGTAGATGCTTATTGTGGATACAAAATGAAACGCTGTTAGGCTTTTTAACATGATGTGCCACAACTCTCACCTTAACTGAAGAAAGGAGTATTGAGCTGAACTATGCATTGCAAAGGAGATACAAAAGGTGAACGTATATATAAAGTGTTTTCCAGGTGAGATAATACATGTATATTTGCGTAAAAAAATCTGACGGTGAGACACTGGATTGTCGGCATGGTGTTTAAAAATAGATTCAGTCTTCTCATTAACTTCTTAATAGCCAGTTAAGCAGAGCTGAATGTTAGGTTAATGACGTTTGACTATTCTTTGTTATTATTTCCTGTTGGCGTGCTAAAGAATCCTCTGGAAATGAAGTAatgtaaacagtgtttttttgATGCTGAGAAAAGATAATCACAGCCTTTGTAAGGTCAATGATTTGGGTCAAAGGAAGAAGATCTAAAGAAGGAAACAGCAGAAATGTGCTTGAATGGATCTTAGATGGAAGGATTTCATGTCTGTTCATCTGCACCTACCACCACTATCGTGTATATAAAATGTGTAACCTGTCTGTACAAACATTAGAGCCACAAGGGCTGGCTGTTACAGGAATGTTTcagtattttttacaaaaaaaagcaacaaaaaaagacactagaaaaaaaaaagatccagtgTAGTGTTTTAGGAATAAAAGCTTCAAGTCCATCGACTAACCAAACTGTACATACTACGAAACTTCTGATGACACGCAATCGTAGCTTAAGGCTTGTGGAGTATGTGCATATTTTTGTGTTTTCCCCCTCTTGATTACACTTTACTTTCCTCTTCTCCAATCACCTAAACCTTTGAAAGATAACAGACAATACTTATACTGTCTTTGCTATAGAGTAACACCCTTTCCTATCTTACTGTACTTTTCTGTGCTTGTAATTCCAATCAGTCCTTAATGATACTGGAATGCCACTCCTGTCTGTTTGACTttgaatatctatctatctatatatatataaatgtctgTCTGCTGCTTGGCTACTTTTTCTGTATTTGACTGTGATTCCTTTAAAGAAACGCTTAGCACCTCATGttactctttttattttataatctacTATTTATATCGCTGTTTGATTtatgttttactttattattggaacacttacatttgaaataaaattttgTCAGAACTC

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050609-7 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000160925

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004043 lncRNA upstream 34005 21672253 ~ 21674458 (+) True XLOC_002085
TCONS_00004041 lncRNA upstream 34163 21671219 ~ 21674300 (+) False XLOC_002085
TCONS_00004040 lncRNA upstream 36124 21670863 ~ 21672339 (+) False XLOC_002085
TCONS_00005879 lncRNA upstream 164901 21542521 ~ 21543562 (+) True XLOC_002081
TCONS_00004023 lncRNA upstream 256328 21444665 ~ 21452135 (+) False XLOC_002078
TCONS_00004074 lncRNA downstream 47250 21867307 ~ 21868226 (+) False XLOC_002089
TCONS_00004076 lncRNA downstream 47276 21867333 ~ 21868723 (+) True XLOC_002089
TCONS_00005706 lncRNA downstream 86095 21906152 ~ 21906377 (+) True XLOC_002091
TCONS_00005880 lncRNA downstream 94578 21914635 ~ 21944085 (+) True XLOC_002092
TCONS_00005881 lncRNA downstream 97820 21917877 ~ 21945344 (+) True XLOC_002093
TCONS_00004044 mRNA upstream 9288 21677058 ~ 21699175 (+) False XLOC_002083
TCONS_00004037 mRNA upstream 32044 21668606 ~ 21676419 (+) True XLOC_002084
TCONS_00004033 mRNA upstream 59291 21588002 ~ 21649172 (+) True XLOC_002082
TCONS_00004031 mRNA upstream 59696 21576966 ~ 21648767 (+) False XLOC_002082
TCONS_00004032 mRNA upstream 59780 21584195 ~ 21648683 (+) False XLOC_002082
TCONS_00004075 mRNA downstream 47250 21867307 ~ 21870457 (+) False XLOC_002089
TCONS_00004077 mRNA downstream 79696 21899753 ~ 21909696 (+) True XLOC_002090
TCONS_00004079 mRNA downstream 183693 22003750 ~ 22031921 (+) False XLOC_002096
TCONS_00004080 mRNA downstream 192332 22012389 ~ 22031866 (+) True XLOC_002096
TCONS_00004081 mRNA downstream 214420 22034477 ~ 22045119 (+) False XLOC_002097
TCONS_00004038 other upstream 34174 21670831 ~ 21674289 (+) False XLOC_002085
TCONS_00004042 other upstream 34174 21671222 ~ 21674289 (+) False XLOC_002085
TCONS_00004039 other upstream 35442 21670857 ~ 21673021 (+) False XLOC_002085
TCONS_00004021 other upstream 265051 21440978 ~ 21443412 (+) False XLOC_002078
TCONS_00004020 other upstream 272487 21434794 ~ 21435976 (+) False XLOC_002078
TCONS_00004078 other downstream 160490 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004086 other downstream 215104 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004103 other downstream 1027215 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004107 other downstream 1071126 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004117 other downstream 1597776 23417833 ~ 23417947 (+) True XLOC_002122

Expression Profile

//