Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004086 |
| length | 519 |
| RNA type | processed_transcript |
| GC content | 0.42 |
| exon number | 5 |
| gene id | XLOC_002097 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 22034477 ~ 22045119 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030097 | hemopoiesis | biological_process |
| GO:0042981 | regulation of apoptotic process | biological_process |
| GO:0006338 | chromatin remodeling | biological_process |
| GO:0000055 | ribosomal large subunit export from nucleus | biological_process |
| GO:0000056 | ribosomal small subunit export from nucleus | biological_process |
| GO:0006407 | rRNA export from nucleus | biological_process |
| GO:0042273 | ribosomal large subunit biogenesis | biological_process |
| GO:0042274 | ribosomal small subunit biogenesis | biological_process |
| GO:0010824 | regulation of centrosome duplication | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0042393 | histone binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-021028-1 | Predicted to enable RNA binding activity; chromatin binding activity; and histone binding activity. Acts upstream of or within hemopoiesis and regulation of apoptotic process. Located in nucleolus. Is expressed in several structures, including digestive system; fin bud; hematopoietic cell; nervous system; and neural tube. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human NPM1 (nucleophosmin 1). |
| ensembl_id | ENSDART00000143461 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005882 | lncRNA | upstream | 85753 | 21936278 ~ 21949408 (+) | True | XLOC_002094 |
| TCONS_00005881 | lncRNA | upstream | 89817 | 21917877 ~ 21945344 (+) | True | XLOC_002093 |
| TCONS_00005880 | lncRNA | upstream | 91076 | 21914635 ~ 21944085 (+) | True | XLOC_002092 |
| TCONS_00005706 | lncRNA | upstream | 128784 | 21906152 ~ 21906377 (+) | True | XLOC_002091 |
| TCONS_00004076 | lncRNA | upstream | 166438 | 21867333 ~ 21868723 (+) | True | XLOC_002089 |
| TCONS_00004087 | lncRNA | downstream | 5283 | 22041530 ~ 22044758 (+) | True | XLOC_002097 |
| TCONS_00004088 | lncRNA | downstream | 98286 | 22134533 ~ 22139340 (+) | True | XLOC_002098 |
| TCONS_00005884 | lncRNA | downstream | 187956 | 22224203 ~ 22263265 (+) | True | XLOC_002099 |
| TCONS_00005885 | lncRNA | downstream | 217097 | 22253344 ~ 22273862 (+) | True | XLOC_002100 |
| TCONS_00005886 | lncRNA | downstream | 239666 | 22275913 ~ 22279448 (+) | True | XLOC_002101 |
| TCONS_00004079 | mRNA | upstream | 3240 | 22003750 ~ 22031921 (+) | False | XLOC_002096 |
| TCONS_00004080 | mRNA | upstream | 3295 | 22012389 ~ 22031866 (+) | True | XLOC_002096 |
| TCONS_00004077 | mRNA | upstream | 125465 | 21899753 ~ 21909696 (+) | True | XLOC_002090 |
| TCONS_00004075 | mRNA | upstream | 164704 | 21867307 ~ 21870457 (+) | False | XLOC_002089 |
| TCONS_00004070 | mRNA | upstream | 215028 | 21801043 ~ 21820133 (+) | False | XLOC_002083 |
| TCONS_00004089 | mRNA | downstream | 345555 | 22381802 ~ 22478129 (+) | True | XLOC_002103 |
| TCONS_00004090 | mRNA | downstream | 474033 | 22510280 ~ 22529956 (+) | False | XLOC_002104 |
| TCONS_00004092 | mRNA | downstream | 474033 | 22510280 ~ 22533793 (+) | False | XLOC_002104 |
| TCONS_00004091 | mRNA | downstream | 474033 | 22510280 ~ 22533793 (+) | False | XLOC_002104 |
| TCONS_00004093 | mRNA | downstream | 491468 | 22527715 ~ 22533186 (+) | True | XLOC_002104 |
| TCONS_00004078 | other | upstream | 54496 | 21980547 ~ 21980665 (+) | True | XLOC_002095 |
| TCONS_00004047 | other | upstream | 215104 | 21701551 ~ 21820057 (+) | False | XLOC_002083 |
| TCONS_00004049 | other | upstream | 215104 | 21708463 ~ 21820057 (+) | False | XLOC_002083 |
| TCONS_00004046 | other | upstream | 216556 | 21701551 ~ 21818605 (+) | False | XLOC_002083 |
| TCONS_00004062 | other | upstream | 216556 | 21786656 ~ 21818605 (+) | False | XLOC_002083 |
| TCONS_00004103 | other | downstream | 811025 | 22847272 ~ 22847404 (+) | True | XLOC_002111 |
| TCONS_00004107 | other | downstream | 854936 | 22891183 ~ 22906920 (+) | True | XLOC_002113 |
| TCONS_00004117 | other | downstream | 1381586 | 23417833 ~ 23417947 (+) | True | XLOC_002122 |
| TCONS_00004125 | other | downstream | 1956134 | 23992381 ~ 23992699 (+) | True | XLOC_002132 |
| TCONS_00004130 | other | downstream | 2317503 | 24353750 ~ 24353866 (+) | True | XLOC_002137 |
