Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004062 |
| length | 747 |
| RNA type | processed_transcript |
| GC content | 0.52 |
| exon number | 5 |
| gene id | XLOC_002083 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 21650828 ~ 21820133 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007155 | cell adhesion | biological_process |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050609-21 | Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. |
| ensembl_id | ENSDART00000170839 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005705 | lncRNA | upstream | 41151 | 21745262 ~ 21745505 (+) | True | XLOC_002088 |
| TCONS_00004043 | lncRNA | upstream | 112198 | 21672253 ~ 21674458 (+) | True | XLOC_002085 |
| TCONS_00004041 | lncRNA | upstream | 112356 | 21671219 ~ 21674300 (+) | False | XLOC_002085 |
| TCONS_00004040 | lncRNA | upstream | 114317 | 21670863 ~ 21672339 (+) | False | XLOC_002085 |
| TCONS_00005879 | lncRNA | upstream | 243094 | 21542521 ~ 21543562 (+) | True | XLOC_002081 |
| TCONS_00004074 | lncRNA | downstream | 48702 | 21867307 ~ 21868226 (+) | False | XLOC_002089 |
| TCONS_00004076 | lncRNA | downstream | 48728 | 21867333 ~ 21868723 (+) | True | XLOC_002089 |
| TCONS_00005706 | lncRNA | downstream | 87547 | 21906152 ~ 21906377 (+) | True | XLOC_002091 |
| TCONS_00005880 | lncRNA | downstream | 96030 | 21914635 ~ 21944085 (+) | True | XLOC_002092 |
| TCONS_00005881 | lncRNA | downstream | 99272 | 21917877 ~ 21945344 (+) | True | XLOC_002093 |
| TCONS_00004052 | mRNA | upstream | 57410 | 21726853 ~ 21729246 (+) | True | XLOC_002087 |
| TCONS_00004051 | mRNA | upstream | 61344 | 21722892 ~ 21725312 (+) | True | XLOC_002086 |
| TCONS_00004044 | mRNA | upstream | 87481 | 21677058 ~ 21699175 (+) | False | XLOC_002083 |
| TCONS_00004037 | mRNA | upstream | 110237 | 21668606 ~ 21676419 (+) | True | XLOC_002084 |
| TCONS_00004033 | mRNA | upstream | 137484 | 21588002 ~ 21649172 (+) | True | XLOC_002082 |
| TCONS_00004075 | mRNA | downstream | 48702 | 21867307 ~ 21870457 (+) | False | XLOC_002089 |
| TCONS_00004077 | mRNA | downstream | 81148 | 21899753 ~ 21909696 (+) | True | XLOC_002090 |
| TCONS_00004079 | mRNA | downstream | 185145 | 22003750 ~ 22031921 (+) | False | XLOC_002096 |
| TCONS_00004080 | mRNA | downstream | 193784 | 22012389 ~ 22031866 (+) | True | XLOC_002096 |
| TCONS_00004081 | mRNA | downstream | 215872 | 22034477 ~ 22045119 (+) | False | XLOC_002097 |
| TCONS_00004038 | other | upstream | 112367 | 21670831 ~ 21674289 (+) | False | XLOC_002085 |
| TCONS_00004042 | other | upstream | 112367 | 21671222 ~ 21674289 (+) | False | XLOC_002085 |
| TCONS_00004039 | other | upstream | 113635 | 21670857 ~ 21673021 (+) | False | XLOC_002085 |
| TCONS_00004021 | other | upstream | 343244 | 21440978 ~ 21443412 (+) | False | XLOC_002078 |
| TCONS_00004020 | other | upstream | 350680 | 21434794 ~ 21435976 (+) | False | XLOC_002078 |
| TCONS_00004078 | other | downstream | 161942 | 21980547 ~ 21980665 (+) | True | XLOC_002095 |
| TCONS_00004086 | other | downstream | 216556 | 22035161 ~ 22036247 (+) | False | XLOC_002097 |
| TCONS_00004103 | other | downstream | 1028667 | 22847272 ~ 22847404 (+) | True | XLOC_002111 |
| TCONS_00004107 | other | downstream | 1072578 | 22891183 ~ 22906920 (+) | True | XLOC_002113 |
| TCONS_00004117 | other | downstream | 1599228 | 23417833 ~ 23417947 (+) | True | XLOC_002122 |
