RNA id: TCONS_00004125


Basic Information

Item Value
RNA id TCONS_00004125
length 233
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_002132
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23983307 ~ 23992917 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTTACAGATGGATGGTTTTACTATCAGTCCAGTTTATACTTCATTTCCTCTGAGAAGAAGAGCTGGTCTGAGAGCAGAAGATACTGTACAGACAGAAGAGGAGATCTGAtcattataaacagcagagaggaACAAAATTTTGTTCACAAGAAGGCTGGTCTTTCCGGAGCCTGGATTGGTCTGACTGACCATGAAAAAGTGGGCATTTGGAAATGGGTTGATGGCAGCACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000144049

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005893 lncRNA upstream 401323 23588675 ~ 23591058 (+) True XLOC_002131
TCONS_00005708 lncRNA upstream 448315 23542617 ~ 23544066 (+) True XLOC_002128
TCONS_00005892 lncRNA upstream 776502 23141296 ~ 23215879 (+) True XLOC_002121
TCONS_00004113 lncRNA upstream 953091 23034329 ~ 23039290 (+) True XLOC_002119
TCONS_00005891 lncRNA upstream 1026955 22960289 ~ 22965426 (+) True XLOC_002117
TCONS_00005710 lncRNA downstream 103540 24096239 ~ 24096470 (+) True XLOC_002134
TCONS_00005711 lncRNA downstream 104356 24097055 ~ 24097310 (+) True XLOC_002135
TCONS_00004129 lncRNA downstream 324154 24316853 ~ 24375160 (+) True XLOC_002136
TCONS_00004131 lncRNA downstream 404399 24397098 ~ 24398671 (+) True XLOC_002138
TCONS_00005895 lncRNA downstream 411991 24404690 ~ 24412025 (+) False XLOC_002139
TCONS_00004124 mRNA upstream 432837 23553533 ~ 23559544 (+) True XLOC_002130
TCONS_00004123 mRNA upstream 441425 23548674 ~ 23550956 (+) True XLOC_002129
TCONS_00004122 mRNA upstream 450493 23537576 ~ 23541888 (+) True XLOC_002127
TCONS_00004121 mRNA upstream 469066 23520952 ~ 23523315 (+) True XLOC_002126
TCONS_00004120 mRNA upstream 472483 23511816 ~ 23519898 (+) True XLOC_002125
TCONS_00004127 mRNA downstream 55964 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004126 mRNA downstream 55964 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004128 mRNA downstream 56184 24048883 ~ 24296589 (+) True XLOC_002133
TCONS_00004132 mRNA downstream 429318 24422017 ~ 24435893 (+) False XLOC_002140
TCONS_00004133 mRNA downstream 429318 24422017 ~ 24442546 (+) False XLOC_002140
TCONS_00004117 other upstream 574434 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004107 other upstream 1085461 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004103 other upstream 1144977 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004086 other upstream 1956134 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004078 other upstream 2011716 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004130 other downstream 361051 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004134 other downstream 429532 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other downstream 434230 24426929 ~ 24435439 (+) False XLOC_002140
TCONS_00004147 other downstream 667443 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004149 other downstream 676075 24668774 ~ 24672929 (+) False XLOC_002143

Expression Profile

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