RNA id: TCONS_00004132


Basic Information

Item Value
RNA id TCONS_00004132
length 2368
RNA type mRNA
GC content 0.49
exon number 13
gene id XLOC_002140
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24422017 ~ 24493323 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGACTTGTTATTATCTCTGGCGCTCTGCAAAAACATAAAAACCAGTCTGAATATACTCTTCTAGACGCTTCATCACCATGTTTAAAAAAGCTAAGAGATGCAATTTCAGGCGGCGGAATGACTCGGAGGATGAGGAAAAAGAGGAGCAGCAACAGTCCGGTGGGCCCGGGGCTGAAGACTCCGCGAGCCCGAGTGAGTCCGGCAGCGGCCCCGCTCCCGGAGCAAACGTGCTGAACAACCACGGAAACGGATTTCAGCCAGGTGCTGTCAAGGCCGTTAAAGAGAAGAAAAAGAGGAAGGAGATCCGAGAGGAGCCGAAAGCAAGTCTGCTGAGCTTCCAGGATGATGAAGATGAAGCAGAAGTTTTCCGTGTGAAGAAGTCCAACCACAGCAAGAAGATCGTCAAGCAGCTCAAGAAAGAATACAAGGAGGATTTGGAGAAGACTGTACCGGAGCAAAGCACTCGTATTGGTGGTCAGAATCTGACCATTAAAGAGGAGCCCTTAGAGGGCAGCAGAGCCAGCAGTGAACAAGGAGAAGAAGAAATGGAGGTGGACAGCAATGAGGATCAGGAGGAGGAGGGTGATCAGAAGTCTGCAGGTGGAGCGTTTAAAGAAAATCTGTCAGCCCTCAGCTTACTCAGACCAGGTGAGATTCCTGATGCAGCCTTCATCCATGCTGCACGTAAACGTCGTCAGATGGCTCGAGAGCTCGGCGGAGACACTCCACTGGTCGAGAATGATCCGACAAACAAACGTCTCGTTCACGAAGATGAAAACGGAGACatggatgatgatgaagatgaaaagaGAATCGTCTTCAGTGGAGTCAACACGAAGAGTCAGAGGCAGAAAATAGCAGAGGAGATTGGTATTGAAGGCAGTGATGATGAAGCTCTAGATAATGGACAGGATGAGGAAGTGAGCCGTTGGGAGCAGGAGCAGATCAGGAAGGGCATTAGCATCCCACAGGTCCAAACCCAGCCTGAAGATACAAGCATGTATTACCAGGGCAGTTATGATGCTCAGCCGTATGGTGCATCCTACGCCATGCCGTTTAACTACGCCACTGCCGTAGCAGGAGTTGACAATAGCAAACCGCTGAAAGCAGAGCCGTCAGTTCCCTATCCCATTCCCTCTTGTGAACTGACCCCTATAACCACAGATCTGGTAAAGAAACGCCTCCAAGACAGGCTGAGCTTCATGCGTCAGGGGCACAATACCAATGCCCGGCGCTATCAGCAGATCCAGGAGGATCTGGAGGCCTCCAAAAAGGCCATCCGGGTCCTGGAGGGCTCCTCTGTAGAGGCCGCAGACAAATATAGATTCTTGCAAGAAATGCGAGGGTATGTTGGAGACTTGCTTGAGTGTTTGAGTGAAAAGGTGCCTGTCATTCTGGAGCTAGAGGCCGCCATGCACCAGTTACTTCGACAGCGGGCGTCCCGTCTCGTCCAGAGAAGACAGGATGATATTAAAGATGAATCGTCGGAGTTTTCCAGCCTTTCAAGTAAGGCTGTTATGGCCCCTAACCTGGACTCATTTGGCCGAGATCGTACTGCCTATCTGGAGCTCGCAAAGCAAAGGAGGATAGCTGAAAGAGAAGCCAGACGAACTCGTCGCAGACAAGCTCGTGAGCAGAACGACAAGAGAGCAGAGCATAAGGAAGGACTGTCTAGTGACGATGAAGAGACGTCCACTGACATTACCAGCTTCGACTCAGAGAGAGAGCGCATCTTAAAAGAGTCAAAGAAGGTGTTTGAGGATGTGGTGGAGGATTTCCATTCTCTGGACAATATCAAATCTCACTTTGAGACCTGGAGAAAGCTGTATTACAGCTGCTACAGAGACGCCTACATTGGATTGTGTCTGCCCAAACTCTTCAACCCTCTTATTCGGCTGCAGCTTATCTCGTGGTCCCCACTGGAGGTGGAGTGCTCCAACTTTGAGTACATGCTGTGGTTTGAGTCTCTGCTCTTCTATGGCTGTGGGGAGCAAAGTGCTCTAAAGAAAGAGGAAGACGTGGATAACAACCTGCTTCCTGCTATTGTAGAAAGAGTGCTGCTTCCTAAACTAGCAGTGCTAACGGATCAGATCTGGGATCCACTGTCCAACAGCCAGACATACAGACTGGTGGCATTCATGAAGAGGCTAGTGAAAGACTATCCCACTGTCCTGCACGGCGAAAACCGCAACACACAAGTCAGTGAACGGATGAGACTGCAGTGCTTTGAAGACTTGATTTTAATCTAATCCTTATTTTTAAATCCGCAAGTGTGCTATTTTTTGCAATTTGTTTTAGAACTTacgattcagttgcctataggagaaatgactaggaataataaacggctgaaaacaatcaaacta

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2352 Predicted to enable DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human PAXBP1 (PAX3 and PAX7 binding protein 1).

Ensembl:

ensembl_id ENSDART00000140572

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005895 lncRNA upstream 9992 24404690 ~ 24412025 (+) False XLOC_002139
TCONS_00005896 lncRNA upstream 14469 24406544 ~ 24407548 (+) True XLOC_002139
TCONS_00004131 lncRNA upstream 23346 24397098 ~ 24398671 (+) True XLOC_002138
TCONS_00004129 lncRNA upstream 46857 24316853 ~ 24375160 (+) True XLOC_002136
TCONS_00005711 lncRNA upstream 324707 24097055 ~ 24097310 (+) True XLOC_002135
TCONS_00005712 lncRNA downstream 3727 24439620 ~ 24445992 (+) False XLOC_002140
TCONS_00005897 lncRNA downstream 214970 24650863 ~ 24655184 (+) True XLOC_002144
TCONS_00004153 lncRNA downstream 254718 24690611 ~ 24692408 (+) False XLOC_002146
TCONS_00004155 lncRNA downstream 258681 24694574 ~ 24697980 (+) True XLOC_002146
TCONS_00005713 lncRNA downstream 379411 24815304 ~ 24819159 (+) True XLOC_002147
TCONS_00004127 mRNA upstream 123975 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004126 mRNA upstream 123975 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004128 mRNA upstream 125428 24048883 ~ 24296589 (+) True XLOC_002133
TCONS_00004124 mRNA upstream 862473 23553533 ~ 23559544 (+) True XLOC_002130
TCONS_00004123 mRNA upstream 871061 23548674 ~ 23550956 (+) True XLOC_002129
TCONS_00004137 mRNA downstream 9805 24445698 ~ 24493323 (+) False XLOC_002140
TCONS_00004139 mRNA downstream 33029 24468922 ~ 24493273 (+) False XLOC_002140
TCONS_00004138 mRNA downstream 33029 24468922 ~ 24493273 (+) True XLOC_002140
TCONS_00004140 mRNA downstream 68399 24504292 ~ 24621639 (+) False XLOC_002141
TCONS_00004141 mRNA downstream 68571 24504464 ~ 24622317 (+) True XLOC_002141
TCONS_00004130 other upstream 68151 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004125 other upstream 429318 23992381 ~ 23992699 (+) True XLOC_002132
TCONS_00004117 other upstream 1004070 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004107 other upstream 1515097 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004103 other upstream 1574613 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004147 other downstream 224249 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004149 other downstream 232881 24668774 ~ 24672929 (+) False XLOC_002143
TCONS_00004165 other downstream 1512349 25948242 ~ 25960748 (+) True XLOC_002157
TCONS_00004166 other downstream 1528391 25964284 ~ 25964399 (+) True XLOC_002158
TCONS_00004170 other downstream 1870336 26306229 ~ 26306343 (+) True XLOC_002162

Expression Profile

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