RNA id: TCONS_00004128


Basic Information

Item Value
RNA id TCONS_00004128
length 2067
RNA type mRNA
GC content 0.51
exon number 16
gene id XLOC_002133
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24048663 ~ 24298042 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATTCAAGCACTGACGAGACTTTAAATCTCACCGCGTTTCTACAGACAGATCCGTACATTGCACATTATGAGGGAGAGCTGCGTAGAAGatataAGCAGTTTGCAGAGCGTCTGGCACAGTTGGAGGAGGCGGAAGGAACCTTTGATCGCTTCACACTGAGTTACCAGTCATTTGGAATTCAGCGGCGATCCAACAACGGGCTGTTCTTTAGGGAATGGGCACCGGGAGCGAAGGCCGTCTTCCTGACTGGAGATTTCAGTAAGCATTCCCACAATCCTTCTTACCCTTTCTCGCAGAACGAGCATGGGAAATGGGATCTTTATCTCCCTCCGAAACTGGACACATCTCCTGCCATCGAGCACCTGACCAAACTCAAGCTTGTGGTCCTGACTAAAACTGGCGAATATCTGTTTCGGATCTCTCCCTGGGCcaaatatgtcacaaaaacagtgGATTCTGTCACTTATGACTGGACCCACTGGGACCCTCCACAACCATACCagTTCCAGCACCCCAGACCCCCTCGGCCCAGCAGTCTTCGAATCTACGAGGCTCATGTGGGCATCAGTTCGCCTGAGGAAAAGATTGCCTCGTACAAAAACTTCACCCGAGATGTGCTTCCTCGCATTAAGGATCTCGGATACAACTGTGTCCAGCTCATGGCAATCATGGAACATGCCTACTATGCAAGCTTTGGCTATCAAGTCACCAACTTCTTTGCTGCTTCCAGCCGCTTTGGCACTCCTGATGATCTGAAGCATCTGGTAGATACGGCACACTCCATGGGCATTGCTGTTCTGCTGGATGTGGTCCACAGTCACGCCTCCAGCAACACAGAGGATGGACTCAACTACTTCGATGGGACTGACTCCTGCTTCTTTCATGGAGGCTCCAGAGGCAAACACTCACTCTGGGACAGTCGACTCTTCAATTACTCCAGTTGGGAGGTGTTGCGGTTCCTGCTCTCCAACCTGCGCTGGTGGATGGAGGAATATCGCTTTGACGGCTTCAGGTTTGACGGTGTGACCTCAATGCTCTACCACCATCATGGTATTGACACATCATTTTCGGGGAACTACAGCGAGTACTTTGGCATGCAAGTGGATGAAAACGCACTCATTTACCTAATGCTGGCCAATCACATCCTGCACAGGCTCTACCCACAATGCATCACTGTAGCGGAGGATGTATCAGGGATGCCAGGCCTGTGCAGGGCCATTGAAGAGGGAGGACTGGGCTTTGATTATCGTCTGACCATGGCCGTGCCAGACAAATGGATCCAGGTACTGAAGGAAGTTCGGGATGAGGACTGGgatttgaggaacattgtttacacCCTGATCAACAGAAGAAGGGGGGAGGCTTCTGTCACTTATGCTGAGAGCCATGACCAGGCATTAGTCGGGGACAAGTCGCTGGCATTTTGGCTGATGGACAAAGAGATGTACACCAACATGAGTGCTCTCACTACCATGACGCCTGTTATAGACCGTGGCATCCAGCTGCATAAACTCATCCGTCTGCTCACTCACAGTCTCGGAGGGGAGGGCTACCTCAACTTCATGGGCAATGAGTTTGGCCATCCAGAATGGCTGGACTTTCCTAGGAAAGGAAACAATGAGAGCTACTATTACGCCCGTCGCCAGTTCAACCTGGTGGACACGGAACATCTGCGATACCGACAACTATACGCTTTCGACCGTGACATGAATCTCACAGAAGACAAATACAGCTGGCTGACTGCCGCTCAGGCTGCAGTCACGACTCTGAATCAAGATGACAAGGTGATTGTATTTGAACGTGCAAACCTGCTGTTTATTTTCAACTTCCATCCCTGCAACAGCTACACGGACTACAGGGTGGCAGCAGAGCATGCTGGGAAATATAAGATCAAATTGAACTCGGACGAGGTGCAGTACGGGGGTCACGGGAGGCTTCTGCAGGACACGGAGTTCTTCACAGAGCCAATGACTTTCAATGGACGAGACCAGTCGTTTCAGATCTACATTCCTTGCAGAACTGCTCTGATCTTGGCAAATGAGGACACTGATTTCAGACACTGA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0003844 1,4-alpha-glucan branching enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-171 Predicted to enable 1,4-alpha-glucan branching enzyme activity. Predicted to be involved in glycogen biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in glycogen storage disease IV and pulmonary tuberculosis. Orthologous to human GBE1 (1,4-alpha-glucan branching enzyme 1).

Ensembl:

ensembl_id ENSDART00000149265

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005894 lncRNA upstream 55966 23983307 ~ 23992917 (+) False XLOC_002132
TCONS_00005709 lncRNA upstream 55966 23990633 ~ 23992917 (+) False XLOC_002132
TCONS_00005893 lncRNA upstream 457825 23588675 ~ 23591058 (+) True XLOC_002131
TCONS_00005708 lncRNA upstream 504817 23542617 ~ 23544066 (+) True XLOC_002128
TCONS_00005892 lncRNA upstream 833004 23141296 ~ 23215879 (+) True XLOC_002121
TCONS_00004129 lncRNA downstream 20264 24316853 ~ 24375160 (+) True XLOC_002136
TCONS_00004131 lncRNA downstream 100509 24397098 ~ 24398671 (+) True XLOC_002138
TCONS_00005895 lncRNA downstream 108101 24404690 ~ 24412025 (+) False XLOC_002139
TCONS_00005896 lncRNA downstream 109955 24406544 ~ 24407548 (+) True XLOC_002139
TCONS_00004136 lncRNA downstream 132540 24429129 ~ 24435726 (+) False XLOC_002140
TCONS_00004124 mRNA upstream 489339 23553533 ~ 23559544 (+) True XLOC_002130
TCONS_00004123 mRNA upstream 497927 23548674 ~ 23550956 (+) True XLOC_002129
TCONS_00004122 mRNA upstream 506995 23537576 ~ 23541888 (+) True XLOC_002127
TCONS_00004121 mRNA upstream 525568 23520952 ~ 23523315 (+) True XLOC_002126
TCONS_00004120 mRNA upstream 528985 23511816 ~ 23519898 (+) True XLOC_002125
TCONS_00004132 mRNA downstream 125428 24422017 ~ 24435893 (+) False XLOC_002140
TCONS_00004133 mRNA downstream 125428 24422017 ~ 24442546 (+) False XLOC_002140
TCONS_00004137 mRNA downstream 149109 24445698 ~ 24493323 (+) False XLOC_002140
TCONS_00004139 mRNA downstream 172333 24468922 ~ 24493273 (+) False XLOC_002140
TCONS_00004138 mRNA downstream 172333 24468922 ~ 24493273 (+) True XLOC_002140
TCONS_00004125 other upstream 56184 23992381 ~ 23992699 (+) True XLOC_002132
TCONS_00004117 other upstream 630936 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004107 other upstream 1141963 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004103 other upstream 1201479 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004086 other upstream 2012636 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004130 other downstream 57161 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004134 other downstream 125642 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other downstream 130340 24426929 ~ 24435439 (+) False XLOC_002140
TCONS_00004147 other downstream 363553 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004149 other downstream 372185 24668774 ~ 24672929 (+) False XLOC_002143

Expression Profile

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